Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_03175 and IAI46_03180 are separated by 100 nucleotides IAI46_03180 and IAI46_03185 are separated by 433 nucleotides
IAI46_03170: IAI46_03170 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 679,761 to 680,408
_03170
IAI46_03175: IAI46_03175 - 2-dehydro-3-deoxygalactonokinase, at 680,405 to 681,307
_03175
IAI46_03180: IAI46_03180 - FadR family transcriptional regulator, at 681,408 to 682,139
_03180
IAI46_03185: IAI46_03185 - 4-hydroxy-tetrahydrodipicolinate reductase, at 682,573 to 683,394
_03185
Position (kb) 681
682
683 Strain fitness (log2 ratio) -2
-1
0
1
2 at 680.423 kb on + strand at 680.424 kb on - strand at 680.433 kb on + strand at 680.434 kb on - strand at 680.456 kb on - strand at 680.464 kb on + strand at 680.465 kb on - strand at 680.611 kb on - strand, within IAI46_03175 at 680.611 kb on - strand, within IAI46_03175 at 680.611 kb on - strand, within IAI46_03175 at 680.618 kb on + strand, within IAI46_03175 at 680.619 kb on - strand, within IAI46_03175 at 680.620 kb on + strand, within IAI46_03175 at 680.621 kb on - strand, within IAI46_03175 at 680.656 kb on + strand, within IAI46_03175 at 680.657 kb on - strand, within IAI46_03175 at 680.807 kb on - strand, within IAI46_03175 at 680.807 kb on - strand, within IAI46_03175 at 681.065 kb on + strand, within IAI46_03175 at 681.065 kb on + strand, within IAI46_03175 at 681.066 kb on - strand, within IAI46_03175 at 681.066 kb on - strand, within IAI46_03175 at 681.069 kb on + strand, within IAI46_03175 at 681.069 kb on + strand, within IAI46_03175 at 681.069 kb on + strand, within IAI46_03175 at 681.070 kb on - strand, within IAI46_03175 at 681.070 kb on - strand, within IAI46_03175 at 681.143 kb on + strand, within IAI46_03175 at 681.143 kb on + strand, within IAI46_03175 at 681.158 kb on + strand, within IAI46_03175 at 681.158 kb on + strand, within IAI46_03175 at 681.159 kb on - strand, within IAI46_03175 at 681.159 kb on - strand, within IAI46_03175 at 681.159 kb on - strand, within IAI46_03175 at 681.159 kb on - strand, within IAI46_03175 at 681.163 kb on + strand, within IAI46_03175 at 681.226 kb on + strand at 681.226 kb on + strand at 681.227 kb on - strand at 681.231 kb on - strand at 681.231 kb on - strand at 681.251 kb on + strand at 681.251 kb on + strand at 681.252 kb on - strand at 681.252 kb on - strand at 681.268 kb on + strand at 681.268 kb on + strand at 681.269 kb on - strand at 681.269 kb on - strand at 681.269 kb on - strand at 681.286 kb on + strand at 681.301 kb on + strand at 681.350 kb on - strand at 681.390 kb on + strand at 681.505 kb on - strand, within IAI46_03180 at 681.572 kb on + strand, within IAI46_03180 at 681.573 kb on - strand, within IAI46_03180 at 681.889 kb on - strand, within IAI46_03180 at 681.889 kb on - strand, within IAI46_03180 at 681.997 kb on - strand, within IAI46_03180 at 682.155 kb on - strand at 682.155 kb on - strand at 682.159 kb on - strand at 682.159 kb on - strand at 682.177 kb on + strand at 682.179 kb on + strand at 682.179 kb on + strand at 682.179 kb on + strand at 682.179 kb on + strand at 682.179 kb on + strand at 682.180 kb on - strand at 682.182 kb on + strand at 682.182 kb on + strand at 682.182 kb on + strand at 682.182 kb on + strand at 682.183 kb on - strand at 682.183 kb on - strand at 682.183 kb on - strand at 682.183 kb on - strand at 682.187 kb on + strand at 682.187 kb on + strand at 682.188 kb on - strand at 682.276 kb on + strand at 682.276 kb on + strand at 682.276 kb on + strand at 682.277 kb on - strand at 682.280 kb on + strand at 682.332 kb on + strand at 682.395 kb on - strand at 682.423 kb on + strand at 682.423 kb on + strand at 682.432 kb on + strand at 682.444 kb on + strand at 682.480 kb on + strand at 682.488 kb on + strand at 682.488 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 680,423 + -0.2 680,424 - -0.2 680,433 + -0.2 680,434 - -0.4 680,456 - -0.9 680,464 + +0.7 680,465 - +0.8 680,611 - IAI46_03175 0.23 +0.5 680,611 - IAI46_03175 0.23 +0.1 680,611 - IAI46_03175 0.23 +0.3 680,618 + IAI46_03175 0.24 +0.9 680,619 - IAI46_03175 0.24 +0.8 680,620 + IAI46_03175 0.24 +0.3 680,621 - IAI46_03175 0.24 +0.1 680,656 + IAI46_03175 0.28 +0.8 680,657 - IAI46_03175 0.28 +0.1 680,807 - IAI46_03175 0.45 -0.4 680,807 - IAI46_03175 0.45 +0.4 681,065 + IAI46_03175 0.73 +0.5 681,065 + IAI46_03175 0.73 -0.3 681,066 - IAI46_03175 0.73 +0.0 681,066 - IAI46_03175 0.73 +0.3 681,069 + IAI46_03175 0.74 +0.7 681,069 + IAI46_03175 0.74 +0.5 681,069 + IAI46_03175 0.74 +0.1 681,070 - IAI46_03175 0.74 +0.9 681,070 - IAI46_03175 0.74 -0.7 681,143 + IAI46_03175 0.82 +0.3 681,143 + IAI46_03175 0.82 +0.2 681,158 + IAI46_03175 0.83 +0.5 681,158 + IAI46_03175 0.83 -0.5 681,159 - IAI46_03175 0.83 -1.3 681,159 - IAI46_03175 0.83 +2.0 681,159 - IAI46_03175 0.83 +0.5 681,159 - IAI46_03175 0.83 -0.3 681,163 + IAI46_03175 0.84 +0.3 681,226 + -0.7 681,226 + -0.6 681,227 - -0.0 681,231 - -2.4 681,231 - +0.7 681,251 + +1.2 681,251 + +0.3 681,252 - -0.1 681,252 - +0.5 681,268 + -0.1 681,268 + +0.8 681,269 - -0.4 681,269 - -0.3 681,269 - -0.9 681,286 + +0.1 681,301 + +0.4 681,350 - -0.2 681,390 + +0.4 681,505 - IAI46_03180 0.13 +0.0 681,572 + IAI46_03180 0.22 -0.9 681,573 - IAI46_03180 0.23 +0.5 681,889 - IAI46_03180 0.66 -0.2 681,889 - IAI46_03180 0.66 +0.4 681,997 - IAI46_03180 0.80 +1.2 682,155 - +0.9 682,155 - -0.5 682,159 - +0.5 682,159 - -1.3 682,177 + +0.2 682,179 + +0.1 682,179 + -0.2 682,179 + +1.2 682,179 + +0.5 682,179 + -0.7 682,180 - +0.9 682,182 + -0.2 682,182 + -0.5 682,182 + +1.4 682,182 + +0.9 682,183 - -1.3 682,183 - -0.6 682,183 - +0.3 682,183 - +0.8 682,187 + -0.4 682,187 + -0.5 682,188 - +0.2 682,276 + +0.8 682,276 + +0.3 682,276 + +0.2 682,277 - +0.2 682,280 + -0.7 682,332 + -0.4 682,395 - +0.6 682,423 + -0.3 682,423 + +1.2 682,432 + +0.2 682,444 + -0.9 682,480 + -0.6 682,488 + +1.5 682,488 + -1.9
Or see this region's nucleotide sequence