Strain Fitness in Serratia liquefaciens MT49 around IAI46_01005

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00995 and IAI46_01000 overlap by 4 nucleotidesIAI46_01000 and IAI46_01005 are separated by 16 nucleotidesIAI46_01005 and IAI46_01010 overlap by 4 nucleotidesIAI46_01010 and IAI46_01015 are separated by 105 nucleotides IAI46_00995: IAI46_00995 - sn-glycerol-3-phosphate ABC transporter permease UgpA, at 223,158 to 224,045 _00995 IAI46_01000: IAI46_01000 - sn-glycerol-3-phosphate ABC transporter permease UgpE, at 224,042 to 224,887 _01000 IAI46_01005: IAI46_01005 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 224,904 to 225,980 _01005 IAI46_01010: IAI46_01010 - glycerophosphodiester phosphodiesterase, at 225,977 to 226,723 _01010 IAI46_01015: IAI46_01015 - AEC family transporter, at 226,829 to 227,785 _01015 Position (kb) 224 225 226Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 223.908 kb on + strand, within IAI46_00995at 223.908 kb on + strand, within IAI46_00995at 223.909 kb on - strand, within IAI46_00995at 223.917 kb on + strand, within IAI46_00995at 224.027 kb on + strandat 224.027 kb on + strandat 224.028 kb on - strandat 224.083 kb on - strandat 224.083 kb on - strandat 224.083 kb on - strandat 224.083 kb on - strandat 224.123 kb on + strandat 224.123 kb on + strandat 224.124 kb on - strandat 224.124 kb on - strandat 224.221 kb on + strand, within IAI46_01000at 224.221 kb on + strand, within IAI46_01000at 224.222 kb on - strand, within IAI46_01000at 224.248 kb on + strand, within IAI46_01000at 224.249 kb on - strand, within IAI46_01000at 224.249 kb on - strand, within IAI46_01000at 224.249 kb on - strand, within IAI46_01000at 224.249 kb on - strand, within IAI46_01000at 224.249 kb on - strand, within IAI46_01000at 224.249 kb on - strand, within IAI46_01000at 224.339 kb on + strand, within IAI46_01000at 224.340 kb on - strand, within IAI46_01000at 224.340 kb on - strand, within IAI46_01000at 224.340 kb on - strand, within IAI46_01000at 224.340 kb on - strand, within IAI46_01000at 224.340 kb on - strand, within IAI46_01000at 224.351 kb on + strand, within IAI46_01000at 224.352 kb on - strand, within IAI46_01000at 224.372 kb on - strand, within IAI46_01000at 224.392 kb on - strand, within IAI46_01000at 224.425 kb on + strand, within IAI46_01000at 224.446 kb on + strand, within IAI46_01000at 224.473 kb on + strand, within IAI46_01000at 224.474 kb on + strand, within IAI46_01000at 224.474 kb on + strand, within IAI46_01000at 224.539 kb on + strand, within IAI46_01000at 224.539 kb on + strand, within IAI46_01000at 224.665 kb on + strand, within IAI46_01000at 224.684 kb on + strand, within IAI46_01000at 224.685 kb on - strand, within IAI46_01000at 224.815 kb on - strandat 224.940 kb on + strandat 224.940 kb on + strandat 224.941 kb on - strandat 224.941 kb on - strandat 224.949 kb on - strandat 224.949 kb on - strandat 225.087 kb on + strand, within IAI46_01005at 225.087 kb on + strand, within IAI46_01005at 225.088 kb on - strand, within IAI46_01005at 225.088 kb on - strand, within IAI46_01005at 225.088 kb on - strand, within IAI46_01005at 225.156 kb on + strand, within IAI46_01005at 225.156 kb on + strand, within IAI46_01005at 225.157 kb on - strand, within IAI46_01005at 225.157 kb on - strand, within IAI46_01005at 225.157 kb on - strand, within IAI46_01005at 225.157 kb on - strand, within IAI46_01005at 225.157 kb on - strand, within IAI46_01005at 225.181 kb on + strand, within IAI46_01005at 225.181 kb on + strand, within IAI46_01005at 225.182 kb on - strand, within IAI46_01005at 225.182 kb on - strand, within IAI46_01005at 225.182 kb on - strand, within IAI46_01005at 225.182 kb on - strand, within IAI46_01005at 225.182 kb on - strand, within IAI46_01005at 225.182 kb on - strand, within IAI46_01005at 225.183 kb on + strand, within IAI46_01005at 225.183 kb on + strand, within IAI46_01005at 225.184 kb on - strand, within IAI46_01005at 225.184 kb on - strand, within IAI46_01005at 225.198 kb on + strand, within IAI46_01005at 225.199 kb on - strand, within IAI46_01005at 225.233 kb on + strand, within IAI46_01005at 225.233 kb on + strand, within IAI46_01005at 225.234 kb on - strand, within IAI46_01005at 225.234 kb on - strand, within IAI46_01005at 225.234 kb on - strand, within IAI46_01005at 225.348 kb on - strand, within IAI46_01005at 225.471 kb on + strand, within IAI46_01005at 225.472 kb on - strand, within IAI46_01005at 225.472 kb on - strand, within IAI46_01005at 225.472 kb on - strand, within IAI46_01005at 225.570 kb on + strand, within IAI46_01005at 225.570 kb on + strand, within IAI46_01005at 225.570 kb on + strand, within IAI46_01005at 225.571 kb on - strand, within IAI46_01005at 225.815 kb on - strand, within IAI46_01005at 225.815 kb on - strand, within IAI46_01005at 225.828 kb on - strand, within IAI46_01005at 225.910 kb on + strandat 225.913 kb on - strandat 225.964 kb on + strandat 225.965 kb on - strandat 226.045 kb on + strandat 226.128 kb on + strand, within IAI46_01010at 226.209 kb on + strand, within IAI46_01010at 226.209 kb on + strand, within IAI46_01010at 226.234 kb on + strand, within IAI46_01010at 226.244 kb on + strand, within IAI46_01010at 226.244 kb on + strand, within IAI46_01010at 226.244 kb on + strand, within IAI46_01010at 226.261 kb on - strand, within IAI46_01010at 226.330 kb on + strand, within IAI46_01010at 226.330 kb on + strand, within IAI46_01010at 226.331 kb on - strand, within IAI46_01010at 226.331 kb on - strand, within IAI46_01010at 226.331 kb on - strand, within IAI46_01010at 226.331 kb on - strand, within IAI46_01010at 226.555 kb on + strand, within IAI46_01010at 226.555 kb on + strand, within IAI46_01010at 226.616 kb on + strand, within IAI46_01010at 226.617 kb on - strand, within IAI46_01010at 226.690 kb on - strandat 226.904 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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223,908 + IAI46_00995 0.84 -0.2
223,908 + IAI46_00995 0.84 -0.8
223,909 - IAI46_00995 0.85 +0.8
223,917 + IAI46_00995 0.85 -0.5
224,027 + -0.3
224,027 + +0.4
224,028 - -0.2
224,083 - +0.4
224,083 - -1.1
224,083 - -0.4
224,083 - +0.3
224,123 + +0.4
224,123 + -0.6
224,124 - -0.2
224,124 - -0.3
224,221 + IAI46_01000 0.21 -0.1
224,221 + IAI46_01000 0.21 -1.1
224,222 - IAI46_01000 0.21 -0.3
224,248 + IAI46_01000 0.24 +0.3
224,249 - IAI46_01000 0.24 +0.3
224,249 - IAI46_01000 0.24 +0.5
224,249 - IAI46_01000 0.24 +1.1
224,249 - IAI46_01000 0.24 +1.8
224,249 - IAI46_01000 0.24 -1.0
224,249 - IAI46_01000 0.24 -0.2
224,339 + IAI46_01000 0.35 +0.0
224,340 - IAI46_01000 0.35 +0.9
224,340 - IAI46_01000 0.35 +0.2
224,340 - IAI46_01000 0.35 -0.1
224,340 - IAI46_01000 0.35 -0.3
224,340 - IAI46_01000 0.35 -0.5
224,351 + IAI46_01000 0.37 +1.1
224,352 - IAI46_01000 0.37 -2.0
224,372 - IAI46_01000 0.39 -0.7
224,392 - IAI46_01000 0.41 +0.0
224,425 + IAI46_01000 0.45 +0.3
224,446 + IAI46_01000 0.48 +1.0
224,473 + IAI46_01000 0.51 -0.1
224,474 + IAI46_01000 0.51 -0.2
224,474 + IAI46_01000 0.51 +0.9
224,539 + IAI46_01000 0.59 -0.9
224,539 + IAI46_01000 0.59 -3.0
224,665 + IAI46_01000 0.74 +0.5
224,684 + IAI46_01000 0.76 +0.6
224,685 - IAI46_01000 0.76 +0.2
224,815 - +0.0
224,940 + -0.5
224,940 + -0.8
224,941 - +0.3
224,941 - +0.2
224,949 - -0.0
224,949 - +1.0
225,087 + IAI46_01005 0.17 +0.5
225,087 + IAI46_01005 0.17 -0.9
225,088 - IAI46_01005 0.17 +0.4
225,088 - IAI46_01005 0.17 +0.5
225,088 - IAI46_01005 0.17 -0.1
225,156 + IAI46_01005 0.23 -0.2
225,156 + IAI46_01005 0.23 +0.7
225,157 - IAI46_01005 0.23 +0.1
225,157 - IAI46_01005 0.23 +0.7
225,157 - IAI46_01005 0.23 +0.7
225,157 - IAI46_01005 0.23 -0.1
225,157 - IAI46_01005 0.23 -0.1
225,181 + IAI46_01005 0.26 -0.1
225,181 + IAI46_01005 0.26 +0.2
225,182 - IAI46_01005 0.26 +1.4
225,182 - IAI46_01005 0.26 +0.3
225,182 - IAI46_01005 0.26 +0.4
225,182 - IAI46_01005 0.26 +0.4
225,182 - IAI46_01005 0.26 -0.3
225,182 - IAI46_01005 0.26 -0.5
225,183 + IAI46_01005 0.26 -0.2
225,183 + IAI46_01005 0.26 -0.1
225,184 - IAI46_01005 0.26 -0.2
225,184 - IAI46_01005 0.26 +0.5
225,198 + IAI46_01005 0.27 -0.6
225,199 - IAI46_01005 0.27 -0.6
225,233 + IAI46_01005 0.31 +0.4
225,233 + IAI46_01005 0.31 +0.1
225,234 - IAI46_01005 0.31 -0.6
225,234 - IAI46_01005 0.31 +0.1
225,234 - IAI46_01005 0.31 -0.0
225,348 - IAI46_01005 0.41 +0.4
225,471 + IAI46_01005 0.53 -1.0
225,472 - IAI46_01005 0.53 +0.8
225,472 - IAI46_01005 0.53 +0.1
225,472 - IAI46_01005 0.53 +0.3
225,570 + IAI46_01005 0.62 -0.1
225,570 + IAI46_01005 0.62 +0.3
225,570 + IAI46_01005 0.62 +0.2
225,571 - IAI46_01005 0.62 +0.1
225,815 - IAI46_01005 0.85 +0.4
225,815 - IAI46_01005 0.85 -0.3
225,828 - IAI46_01005 0.86 +0.4
225,910 + +0.4
225,913 - +0.3
225,964 + -0.6
225,965 - +0.1
226,045 + -0.2
226,128 + IAI46_01010 0.20 +0.2
226,209 + IAI46_01010 0.31 +0.4
226,209 + IAI46_01010 0.31 +0.9
226,234 + IAI46_01010 0.34 -0.4
226,244 + IAI46_01010 0.36 -0.3
226,244 + IAI46_01010 0.36 -0.3
226,244 + IAI46_01010 0.36 +0.1
226,261 - IAI46_01010 0.38 -0.1
226,330 + IAI46_01010 0.47 +0.5
226,330 + IAI46_01010 0.47 +0.1
226,331 - IAI46_01010 0.47 -0.8
226,331 - IAI46_01010 0.47 -0.4
226,331 - IAI46_01010 0.47 +0.8
226,331 - IAI46_01010 0.47 +0.0
226,555 + IAI46_01010 0.77 +0.9
226,555 + IAI46_01010 0.77 +0.4
226,616 + IAI46_01010 0.86 -0.5
226,617 - IAI46_01010 0.86 -0.7
226,690 - +1.3
226,904 + +0.9

Or see this region's nucleotide sequence