Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0215

Experiment: m.b. Cisplatin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0214 and Echvi_0215 overlap by 17 nucleotidesEchvi_0215 and Echvi_0216 overlap by 4 nucleotidesEchvi_0216 and Echvi_0217 overlap by 8 nucleotides Echvi_0214: Echvi_0214 - Putative transcription activator, at 233,915 to 234,568 _0214 Echvi_0215: Echvi_0215 - phosphomethylpyrimidine kinase, at 234,552 to 235,391 _0215 Echvi_0216: Echvi_0216 - thiamine-phosphate pyrophosphorylase, at 235,388 to 236,026 _0216 Echvi_0217: Echvi_0217 - hydroxyethylthiazole kinase, at 236,019 to 236,819 _0217 Position (kb) 234 235 236Strain fitness (log2 ratio) -2 -1 0 1 2at 233.582 kb on - strandat 233.643 kb on + strandat 233.643 kb on + strandat 233.653 kb on - strandat 233.716 kb on + strandat 233.734 kb on - strandat 233.818 kb on + strandat 233.843 kb on + strandat 234.091 kb on - strand, within Echvi_0214at 234.091 kb on - strand, within Echvi_0214at 234.094 kb on + strand, within Echvi_0214at 234.094 kb on + strand, within Echvi_0214at 234.095 kb on - strand, within Echvi_0214at 234.095 kb on - strand, within Echvi_0214at 234.095 kb on - strand, within Echvi_0214at 234.141 kb on + strand, within Echvi_0214at 234.142 kb on - strand, within Echvi_0214at 234.142 kb on - strand, within Echvi_0214at 234.145 kb on + strand, within Echvi_0214at 234.146 kb on - strand, within Echvi_0214at 234.163 kb on + strand, within Echvi_0214at 234.163 kb on + strand, within Echvi_0214at 234.207 kb on - strand, within Echvi_0214at 234.207 kb on - strand, within Echvi_0214at 234.237 kb on + strand, within Echvi_0214at 234.237 kb on + strand, within Echvi_0214at 234.237 kb on + strand, within Echvi_0214at 234.237 kb on + strand, within Echvi_0214at 234.237 kb on + strand, within Echvi_0214at 234.238 kb on - strand, within Echvi_0214at 234.238 kb on - strand, within Echvi_0214at 234.238 kb on - strand, within Echvi_0214at 234.330 kb on - strand, within Echvi_0214at 234.457 kb on + strand, within Echvi_0214at 234.593 kb on - strandat 234.593 kb on - strandat 234.883 kb on - strand, within Echvi_0215at 234.883 kb on - strand, within Echvi_0215at 235.143 kb on + strand, within Echvi_0215at 235.224 kb on - strand, within Echvi_0215at 235.224 kb on - strand, within Echvi_0215at 235.230 kb on + strand, within Echvi_0215at 235.241 kb on + strand, within Echvi_0215at 235.253 kb on + strand, within Echvi_0215at 235.253 kb on + strand, within Echvi_0215at 235.254 kb on - strand, within Echvi_0215at 235.369 kb on + strandat 235.369 kb on + strandat 235.369 kb on + strandat 235.382 kb on + strandat 235.522 kb on + strand, within Echvi_0216at 235.523 kb on - strand, within Echvi_0216at 235.580 kb on + strand, within Echvi_0216at 235.581 kb on - strand, within Echvi_0216at 235.644 kb on + strand, within Echvi_0216at 235.644 kb on + strand, within Echvi_0216at 235.644 kb on + strand, within Echvi_0216at 235.645 kb on - strand, within Echvi_0216at 235.645 kb on - strand, within Echvi_0216at 235.672 kb on + strand, within Echvi_0216at 235.721 kb on + strand, within Echvi_0216at 235.744 kb on + strand, within Echvi_0216at 235.745 kb on - strand, within Echvi_0216at 235.745 kb on - strand, within Echvi_0216at 235.751 kb on - strand, within Echvi_0216at 235.763 kb on + strand, within Echvi_0216at 235.763 kb on + strand, within Echvi_0216at 235.763 kb on + strand, within Echvi_0216at 235.763 kb on + strand, within Echvi_0216at 235.763 kb on + strand, within Echvi_0216at 235.764 kb on - strand, within Echvi_0216at 235.764 kb on - strand, within Echvi_0216at 235.776 kb on + strand, within Echvi_0216at 235.807 kb on + strand, within Echvi_0216at 235.807 kb on + strand, within Echvi_0216at 235.807 kb on + strand, within Echvi_0216at 235.808 kb on - strand, within Echvi_0216at 235.808 kb on - strand, within Echvi_0216at 235.870 kb on + strand, within Echvi_0216at 235.996 kb on - strandat 235.996 kb on - strandat 236.020 kb on + strandat 236.020 kb on + strandat 236.020 kb on + strandat 236.077 kb on + strandat 236.090 kb on - strandat 236.091 kb on + strandat 236.092 kb on - strandat 236.092 kb on - strandat 236.092 kb on - strandat 236.092 kb on - strandat 236.092 kb on - strandat 236.095 kb on + strandat 236.095 kb on + strandat 236.095 kb on + strandat 236.096 kb on - strandat 236.096 kb on - strandat 236.096 kb on - strandat 236.096 kb on - strandat 236.096 kb on - strandat 236.136 kb on + strand, within Echvi_0217at 236.185 kb on + strand, within Echvi_0217at 236.309 kb on + strand, within Echvi_0217at 236.310 kb on - strand, within Echvi_0217at 236.310 kb on - strand, within Echvi_0217at 236.310 kb on - strand, within Echvi_0217at 236.311 kb on + strand, within Echvi_0217at 236.311 kb on + strand, within Echvi_0217at 236.312 kb on - strand, within Echvi_0217at 236.328 kb on + strand, within Echvi_0217at 236.328 kb on + strand, within Echvi_0217at 236.328 kb on + strand, within Echvi_0217at 236.329 kb on - strand, within Echvi_0217at 236.329 kb on - strand, within Echvi_0217at 236.329 kb on - strand, within Echvi_0217at 236.372 kb on - strand, within Echvi_0217

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
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233,582 - -0.2
233,643 + -1.1
233,643 + -1.1
233,653 - +0.7
233,716 + +1.6
233,734 - -0.9
233,818 + -0.8
233,843 + -0.1
234,091 - Echvi_0214 0.27 -0.3
234,091 - Echvi_0214 0.27 -1.4
234,094 + Echvi_0214 0.27 +2.1
234,094 + Echvi_0214 0.27 +1.6
234,095 - Echvi_0214 0.28 +0.9
234,095 - Echvi_0214 0.28 -0.2
234,095 - Echvi_0214 0.28 +2.1
234,141 + Echvi_0214 0.35 +0.4
234,142 - Echvi_0214 0.35 -0.6
234,142 - Echvi_0214 0.35 -0.8
234,145 + Echvi_0214 0.35 +0.2
234,146 - Echvi_0214 0.35 -1.3
234,163 + Echvi_0214 0.38 +0.0
234,163 + Echvi_0214 0.38 +1.2
234,207 - Echvi_0214 0.45 -0.2
234,207 - Echvi_0214 0.45 +1.7
234,237 + Echvi_0214 0.49 -0.1
234,237 + Echvi_0214 0.49 -0.3
234,237 + Echvi_0214 0.49 -0.2
234,237 + Echvi_0214 0.49 -2.2
234,237 + Echvi_0214 0.49 +1.5
234,238 - Echvi_0214 0.49 -0.2
234,238 - Echvi_0214 0.49 +0.2
234,238 - Echvi_0214 0.49 +0.4
234,330 - Echvi_0214 0.63 +0.9
234,457 + Echvi_0214 0.83 +0.5
234,593 - -0.2
234,593 - +0.4
234,883 - Echvi_0215 0.39 -1.3
234,883 - Echvi_0215 0.39 -0.6
235,143 + Echvi_0215 0.70 -1.8
235,224 - Echvi_0215 0.80 +1.1
235,224 - Echvi_0215 0.80 -0.4
235,230 + Echvi_0215 0.81 -0.5
235,241 + Echvi_0215 0.82 -0.5
235,253 + Echvi_0215 0.83 -0.3
235,253 + Echvi_0215 0.83 -1.8
235,254 - Echvi_0215 0.84 -0.9
235,369 + +0.2
235,369 + -0.1
235,369 + -0.9
235,382 + -0.2
235,522 + Echvi_0216 0.21 +1.1
235,523 - Echvi_0216 0.21 +1.1
235,580 + Echvi_0216 0.30 +1.0
235,581 - Echvi_0216 0.30 +0.0
235,644 + Echvi_0216 0.40 -0.3
235,644 + Echvi_0216 0.40 +0.2
235,644 + Echvi_0216 0.40 -0.9
235,645 - Echvi_0216 0.40 +0.2
235,645 - Echvi_0216 0.40 -0.3
235,672 + Echvi_0216 0.44 +1.5
235,721 + Echvi_0216 0.52 -0.1
235,744 + Echvi_0216 0.56 +0.3
235,745 - Echvi_0216 0.56 +1.3
235,745 - Echvi_0216 0.56 +0.7
235,751 - Echvi_0216 0.57 -1.0
235,763 + Echvi_0216 0.59 -0.5
235,763 + Echvi_0216 0.59 -0.5
235,763 + Echvi_0216 0.59 +0.7
235,763 + Echvi_0216 0.59 -0.1
235,763 + Echvi_0216 0.59 -0.3
235,764 - Echvi_0216 0.59 -1.8
235,764 - Echvi_0216 0.59 +0.6
235,776 + Echvi_0216 0.61 +0.6
235,807 + Echvi_0216 0.66 +0.4
235,807 + Echvi_0216 0.66 +0.7
235,807 + Echvi_0216 0.66 +1.0
235,808 - Echvi_0216 0.66 +0.2
235,808 - Echvi_0216 0.66 -1.1
235,870 + Echvi_0216 0.75 -0.4
235,996 - +1.6
235,996 - -0.1
236,020 + -0.2
236,020 + -1.1
236,020 + +0.9
236,077 + +1.7
236,090 - +0.1
236,091 + +0.7
236,092 - +0.4
236,092 - -0.2
236,092 - +0.4
236,092 - +0.4
236,092 - +0.5
236,095 + -0.2
236,095 + -0.6
236,095 + -0.2
236,096 - -1.4
236,096 - -1.4
236,096 - +0.2
236,096 - -0.2
236,096 - +0.8
236,136 + Echvi_0217 0.15 -1.0
236,185 + Echvi_0217 0.21 -0.2
236,309 + Echvi_0217 0.36 +0.8
236,310 - Echvi_0217 0.36 -1.4
236,310 - Echvi_0217 0.36 +1.0
236,310 - Echvi_0217 0.36 +0.6
236,311 + Echvi_0217 0.36 -0.1
236,311 + Echvi_0217 0.36 +0.5
236,312 - Echvi_0217 0.37 -1.0
236,328 + Echvi_0217 0.39 +0.1
236,328 + Echvi_0217 0.39 +0.0
236,328 + Echvi_0217 0.39 -0.9
236,329 - Echvi_0217 0.39 -0.6
236,329 - Echvi_0217 0.39 -1.0
236,329 - Echvi_0217 0.39 -0.4
236,372 - Echvi_0217 0.44 -0.2

Or see this region's nucleotide sequence