Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0167

Experiment: m.b. Cisplatin 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0166 and Echvi_0167 are separated by 17 nucleotidesEchvi_0167 and Echvi_0168 are separated by 60 nucleotides Echvi_0166: Echvi_0166 - ATP-dependent DNA helicase RecQ, at 169,446 to 171,623 _0166 Echvi_0167: Echvi_0167 - phosphoribosylamine--glycine ligase, at 171,641 to 172,933 _0167 Echvi_0168: Echvi_0168 - Uncharacterized homolog of PSP1, at 172,994 to 174,391 _0168 Position (kb) 171 172 173Strain fitness (log2 ratio) -3 -2 -1 0 1at 170.776 kb on - strandat 171.233 kb on - strand, within Echvi_0166at 171.638 kb on + strandat 172.932 kb on - strandat 172.961 kb on + strandat 172.981 kb on + strandat 172.981 kb on + strandat 172.984 kb on + strandat 172.984 kb on + strandat 172.984 kb on + strandat 172.985 kb on - strandat 172.986 kb on + strandat 172.986 kb on + strandat 172.986 kb on + strandat 173.005 kb on + strandat 173.005 kb on + strandat 173.256 kb on - strand, within Echvi_0168at 173.281 kb on - strand, within Echvi_0168at 173.321 kb on - strand, within Echvi_0168at 173.651 kb on - strand, within Echvi_0168

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.05 mg/ml
remove
170,776 - +0.7
171,233 - Echvi_0166 0.82 -0.9
171,638 + -0.3
172,932 - -2.2
172,961 + -0.4
172,981 + -0.2
172,981 + -0.1
172,984 + -3.0
172,984 + -1.0
172,984 + +0.1
172,985 - -3.3
172,986 + -1.1
172,986 + -1.7
172,986 + -1.3
173,005 + -1.7
173,005 + -1.0
173,256 - Echvi_0168 0.19 -2.2
173,281 - Echvi_0168 0.21 -1.9
173,321 - Echvi_0168 0.23 -1.6
173,651 - Echvi_0168 0.47 +0.1

Or see this region's nucleotide sequence