Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04136 and ECD_04137 are separated by 322 nucleotides
ECD_04136: ECD_04136 - putative integrase, at 4,408,343 to 4,409,533
_04136
ECD_04137: ECD_04137 - hypothetical protein, at 4,409,856 to 4,410,191
_04137
Position (kb)
4409
4410
4411 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4408.906 kb on + strand, within ECD_04136 at 4408.907 kb on - strand, within ECD_04136 at 4408.914 kb on + strand, within ECD_04136 at 4408.918 kb on + strand, within ECD_04136 at 4408.918 kb on + strand, within ECD_04136 at 4408.918 kb on + strand, within ECD_04136 at 4408.918 kb on + strand, within ECD_04136 at 4408.918 kb on + strand, within ECD_04136 at 4408.919 kb on - strand, within ECD_04136 at 4408.919 kb on - strand, within ECD_04136 at 4408.919 kb on - strand, within ECD_04136 at 4408.919 kb on - strand, within ECD_04136 at 4408.922 kb on + strand, within ECD_04136 at 4408.922 kb on + strand, within ECD_04136 at 4408.922 kb on + strand, within ECD_04136 at 4408.922 kb on + strand, within ECD_04136 at 4408.922 kb on + strand, within ECD_04136 at 4408.922 kb on + strand, within ECD_04136 at 4408.922 kb on + strand, within ECD_04136 at 4408.922 kb on + strand, within ECD_04136 at 4408.923 kb on - strand, within ECD_04136 at 4408.923 kb on - strand, within ECD_04136 at 4408.923 kb on - strand, within ECD_04136 at 4408.923 kb on - strand, within ECD_04136 at 4408.923 kb on - strand, within ECD_04136 at 4408.923 kb on - strand, within ECD_04136 at 4408.923 kb on - strand, within ECD_04136 at 4408.923 kb on - strand, within ECD_04136 at 4408.924 kb on + strand, within ECD_04136 at 4408.931 kb on - strand, within ECD_04136 at 4408.931 kb on - strand, within ECD_04136 at 4408.954 kb on - strand, within ECD_04136 at 4408.975 kb on + strand, within ECD_04136 at 4409.032 kb on + strand, within ECD_04136 at 4409.032 kb on + strand, within ECD_04136 at 4409.116 kb on - strand, within ECD_04136 at 4409.240 kb on - strand, within ECD_04136 at 4409.443 kb on - strand at 4409.870 kb on + strand at 4409.903 kb on + strand, within ECD_04137 at 4409.904 kb on - strand, within ECD_04137 at 4410.060 kb on + strand, within ECD_04137 at 4410.095 kb on - strand, within ECD_04137 at 4410.169 kb on + strand at 4410.207 kb on - strand at 4410.256 kb on + strand at 4410.256 kb on + strand at 4410.256 kb on + strand at 4410.289 kb on + strand at 4410.290 kb on - strand at 4410.290 kb on - strand at 4410.308 kb on + strand at 4410.309 kb on - strand at 4410.309 kb on - strand at 4410.482 kb on + strand at 4410.483 kb on - strand at 4410.608 kb on - strand at 4410.608 kb on - strand at 4410.638 kb on + strand at 4410.656 kb on + strand at 4410.656 kb on + strand at 4410.658 kb on + strand at 4410.722 kb on - strand at 4410.722 kb on - strand at 4410.722 kb on - strand at 4410.722 kb on - strand at 4410.722 kb on - strand at 4410.731 kb on + strand at 4410.731 kb on + strand at 4410.731 kb on + strand at 4410.731 kb on + strand at 4410.732 kb on - strand at 4410.732 kb on - strand at 4410.732 kb on - strand at 4410.732 kb on - strand at 4410.732 kb on - strand at 4410.732 kb on - strand at 4410.732 kb on - strand at 4410.732 kb on - strand at 4410.733 kb on + strand at 4410.734 kb on - strand at 4410.734 kb on - strand at 4410.734 kb on - strand at 4410.765 kb on - strand at 4410.773 kb on + strand at 4410.778 kb on + strand at 4410.779 kb on - strand at 4410.780 kb on + strand at 4410.780 kb on + strand at 4410.854 kb on + strand at 4410.912 kb on - strand at 4410.921 kb on - strand at 4410.923 kb on + strand at 4410.923 kb on + strand at 4410.923 kb on + strand at 4410.924 kb on - strand at 4410.924 kb on - strand at 4410.925 kb on - strand at 4410.949 kb on + strand at 4411.142 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 4,408,906 + ECD_04136 0.47 -1.3 4,408,907 - ECD_04136 0.47 -0.8 4,408,914 + ECD_04136 0.48 +0.6 4,408,918 + ECD_04136 0.48 +0.3 4,408,918 + ECD_04136 0.48 -0.0 4,408,918 + ECD_04136 0.48 +0.1 4,408,918 + ECD_04136 0.48 +0.5 4,408,918 + ECD_04136 0.48 +1.1 4,408,919 - ECD_04136 0.48 +1.0 4,408,919 - ECD_04136 0.48 +1.1 4,408,919 - ECD_04136 0.48 -0.0 4,408,919 - ECD_04136 0.48 +0.2 4,408,922 + ECD_04136 0.49 -0.1 4,408,922 + ECD_04136 0.49 +0.8 4,408,922 + ECD_04136 0.49 -0.4 4,408,922 + ECD_04136 0.49 -0.1 4,408,922 + ECD_04136 0.49 +0.1 4,408,922 + ECD_04136 0.49 +0.5 4,408,922 + ECD_04136 0.49 +0.7 4,408,922 + ECD_04136 0.49 -0.6 4,408,923 - ECD_04136 0.49 -0.1 4,408,923 - ECD_04136 0.49 -0.6 4,408,923 - ECD_04136 0.49 +0.3 4,408,923 - ECD_04136 0.49 +0.1 4,408,923 - ECD_04136 0.49 -0.4 4,408,923 - ECD_04136 0.49 +0.3 4,408,923 - ECD_04136 0.49 -0.0 4,408,923 - ECD_04136 0.49 -0.0 4,408,924 + ECD_04136 0.49 +0.5 4,408,931 - ECD_04136 0.49 +0.8 4,408,931 - ECD_04136 0.49 +1.1 4,408,954 - ECD_04136 0.51 +0.2 4,408,975 + ECD_04136 0.53 -0.0 4,409,032 + ECD_04136 0.58 -0.8 4,409,032 + ECD_04136 0.58 +0.3 4,409,116 - ECD_04136 0.65 +0.7 4,409,240 - ECD_04136 0.75 -0.3 4,409,443 - +0.1 4,409,870 + -0.7 4,409,903 + ECD_04137 0.14 +0.7 4,409,904 - ECD_04137 0.14 -0.9 4,410,060 + ECD_04137 0.61 -0.3 4,410,095 - ECD_04137 0.71 +2.5 4,410,169 + -0.8 4,410,207 - -0.3 4,410,256 + +0.1 4,410,256 + +0.2 4,410,256 + +0.4 4,410,289 + -0.1 4,410,290 - +0.2 4,410,290 - +0.2 4,410,308 + +0.1 4,410,309 - -0.8 4,410,309 - -0.3 4,410,482 + -0.4 4,410,483 - +0.0 4,410,608 - -0.2 4,410,608 - -0.8 4,410,638 + +0.3 4,410,656 + +0.7 4,410,656 + -0.1 4,410,658 + -0.2 4,410,722 - +0.5 4,410,722 - -0.3 4,410,722 - +0.1 4,410,722 - +0.6 4,410,722 - +1.2 4,410,731 + -0.1 4,410,731 + -0.1 4,410,731 + +1.0 4,410,731 + +1.2 4,410,732 - +0.2 4,410,732 - +0.9 4,410,732 - -1.0 4,410,732 - +0.4 4,410,732 - +1.4 4,410,732 - +0.6 4,410,732 - +0.6 4,410,732 - +0.2 4,410,733 + -0.4 4,410,734 - +0.1 4,410,734 - -0.6 4,410,734 - -1.3 4,410,765 - -0.5 4,410,773 + +0.9 4,410,778 + -0.1 4,410,779 - +0.3 4,410,780 + -1.8 4,410,780 + -0.9 4,410,854 + +1.0 4,410,912 - +0.2 4,410,921 - -1.3 4,410,923 + +0.0 4,410,923 + -0.7 4,410,923 + +0.5 4,410,924 - -0.2 4,410,924 - +0.3 4,410,925 - +0.4 4,410,949 + +0.7 4,411,142 - +0.6
Or see this region's nucleotide sequence