Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04115 and ECD_04116 are separated by 130 nucleotides ECD_04116 and ECD_04117 are separated by 70 nucleotides ECD_04117 and ECD_04118 are separated by 144 nucleotides ECD_04118 and ECD_04119 are separated by 122 nucleotides
ECD_04115: ECD_04115 - UPF0131 family protein, at 4,384,456 to 4,384,851
_04115
ECD_04116: ECD_04116 - c-di-GMP-binding biofilm dispersal mediator protein, at 4,384,982 to 4,385,695
_04116
ECD_04117: ECD_04117 - transcriptional repressor for divergent bdcA, at 4,385,766 to 4,386,359
_04117
ECD_04118: ECD_04118 - biofilm modulator regulated by toxins; DUF386 family protein, cupin superfamily protein, at 4,386,504 to 4,386,956
_04118
ECD_04119: ECD_04119 - SopA-central-domain-like hexapeptide repeat protein, at 4,387,079 to 4,388,731
_04119
Position (kb) 4385
4386
4387 Strain fitness (log2 ratio) -1
0
1 at 4384.805 kb on + strand, within ECD_04115 at 4384.806 kb on - strand, within ECD_04115 at 4384.965 kb on + strand at 4384.966 kb on - strand at 4384.975 kb on + strand at 4385.008 kb on + strand at 4385.008 kb on + strand at 4385.009 kb on - strand at 4385.009 kb on - strand at 4385.063 kb on - strand, within ECD_04116 at 4385.063 kb on - strand, within ECD_04116 at 4385.260 kb on - strand, within ECD_04116 at 4385.284 kb on + strand, within ECD_04116 at 4385.285 kb on - strand, within ECD_04116 at 4385.312 kb on + strand, within ECD_04116 at 4385.377 kb on + strand, within ECD_04116 at 4385.378 kb on - strand, within ECD_04116 at 4385.414 kb on + strand, within ECD_04116 at 4385.454 kb on - strand, within ECD_04116 at 4385.483 kb on - strand, within ECD_04116 at 4385.597 kb on + strand, within ECD_04116 at 4385.598 kb on - strand, within ECD_04116 at 4385.598 kb on - strand, within ECD_04116 at 4385.627 kb on + strand at 4385.627 kb on + strand at 4385.627 kb on + strand at 4385.628 kb on - strand at 4385.628 kb on - strand at 4385.628 kb on - strand at 4385.719 kb on - strand at 4385.957 kb on + strand, within ECD_04117 at 4385.957 kb on + strand, within ECD_04117 at 4385.976 kb on + strand, within ECD_04117 at 4385.976 kb on + strand, within ECD_04117 at 4385.994 kb on - strand, within ECD_04117 at 4386.075 kb on + strand, within ECD_04117 at 4386.077 kb on + strand, within ECD_04117 at 4386.165 kb on + strand, within ECD_04117 at 4386.189 kb on + strand, within ECD_04117 at 4386.189 kb on + strand, within ECD_04117 at 4386.190 kb on - strand, within ECD_04117 at 4386.195 kb on + strand, within ECD_04117 at 4386.195 kb on + strand, within ECD_04117 at 4386.195 kb on + strand, within ECD_04117 at 4386.195 kb on + strand, within ECD_04117 at 4386.195 kb on + strand, within ECD_04117 at 4386.196 kb on - strand, within ECD_04117 at 4386.198 kb on - strand, within ECD_04117 at 4386.518 kb on + strand at 4386.519 kb on - strand at 4386.524 kb on + strand at 4386.553 kb on + strand, within ECD_04118 at 4386.572 kb on + strand, within ECD_04118 at 4386.572 kb on + strand, within ECD_04118 at 4386.639 kb on + strand, within ECD_04118 at 4386.640 kb on - strand, within ECD_04118 at 4386.640 kb on - strand, within ECD_04118 at 4386.794 kb on + strand, within ECD_04118 at 4386.844 kb on + strand, within ECD_04118
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 4,384,805 + ECD_04115 0.88 +0.3 4,384,806 - ECD_04115 0.88 +0.7 4,384,965 + +0.3 4,384,966 - -0.2 4,384,975 + -0.7 4,385,008 + +0.1 4,385,008 + -0.5 4,385,009 - -0.2 4,385,009 - -0.1 4,385,063 - ECD_04116 0.11 -0.6 4,385,063 - ECD_04116 0.11 -0.5 4,385,260 - ECD_04116 0.39 +0.7 4,385,284 + ECD_04116 0.42 -0.1 4,385,285 - ECD_04116 0.42 -0.0 4,385,312 + ECD_04116 0.46 +0.5 4,385,377 + ECD_04116 0.55 +0.6 4,385,378 - ECD_04116 0.55 -0.0 4,385,414 + ECD_04116 0.61 +1.4 4,385,454 - ECD_04116 0.66 -0.2 4,385,483 - ECD_04116 0.70 -0.4 4,385,597 + ECD_04116 0.86 +0.6 4,385,598 - ECD_04116 0.86 +0.4 4,385,598 - ECD_04116 0.86 +0.9 4,385,627 + +0.6 4,385,627 + -0.3 4,385,627 + -0.0 4,385,628 - +0.7 4,385,628 - -0.4 4,385,628 - -0.4 4,385,719 - +0.5 4,385,957 + ECD_04117 0.32 +0.0 4,385,957 + ECD_04117 0.32 +1.4 4,385,976 + ECD_04117 0.35 -0.6 4,385,976 + ECD_04117 0.35 +0.4 4,385,994 - ECD_04117 0.38 -0.8 4,386,075 + ECD_04117 0.52 -0.1 4,386,077 + ECD_04117 0.52 -0.0 4,386,165 + ECD_04117 0.67 -0.7 4,386,189 + ECD_04117 0.71 -0.9 4,386,189 + ECD_04117 0.71 +0.0 4,386,190 - ECD_04117 0.71 +0.1 4,386,195 + ECD_04117 0.72 -0.6 4,386,195 + ECD_04117 0.72 +1.0 4,386,195 + ECD_04117 0.72 +0.6 4,386,195 + ECD_04117 0.72 -0.7 4,386,195 + ECD_04117 0.72 +0.7 4,386,196 - ECD_04117 0.72 -0.4 4,386,198 - ECD_04117 0.73 +0.3 4,386,518 + +0.2 4,386,519 - -0.4 4,386,524 + -1.0 4,386,553 + ECD_04118 0.11 -1.1 4,386,572 + ECD_04118 0.15 +0.4 4,386,572 + ECD_04118 0.15 +0.2 4,386,639 + ECD_04118 0.30 +0.8 4,386,640 - ECD_04118 0.30 +0.3 4,386,640 - ECD_04118 0.30 +0.8 4,386,794 + ECD_04118 0.64 +0.0 4,386,844 + ECD_04118 0.75 +0.4
Or see this region's nucleotide sequence