Strain Fitness in Escherichia coli BL21 around ECD_04032

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04031 and ECD_04032 are separated by 94 nucleotidesECD_04032 and ECD_t00080 are separated by 210 nucleotidesECD_t00080 and ECD_t00081 are separated by 36 nucleotidesECD_t00081 and ECD_t00082 are separated by 35 nucleotidesECD_t00082 and ECD_04033 are separated by 269 nucleotides ECD_04031: ECD_04031 - ribosome small subunit-dependent GTPase A, at 4,296,977 to 4,298,029 _04031 ECD_04032: ECD_04032 - oligoribonuclease, at 4,298,124 to 4,298,669 _04032 ECD_t00080: ECD_t00080 - tRNA-Gly, at 4,298,880 to 4,298,955 _t00080 ECD_t00081: ECD_t00081 - tRNA-Gly, at 4,298,992 to 4,299,067 _t00081 ECD_t00082: ECD_t00082 - tRNA-Gly, at 4,299,103 to 4,299,178 _t00082 ECD_04033: ECD_04033 - epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis, at 4,299,448 to 4,300,587 _04033 Position (kb) 4298 4299Strain fitness (log2 ratio) -2 -1 0 1at 4298.070 kb on - strandat 4298.070 kb on - strandat 4298.070 kb on - strandat 4298.070 kb on - strandat 4298.070 kb on - strandat 4298.074 kb on + strandat 4298.074 kb on + strandat 4298.094 kb on + strandat 4298.094 kb on + strandat 4298.094 kb on + strandat 4298.096 kb on + strandat 4298.096 kb on + strandat 4298.096 kb on + strandat 4298.096 kb on + strandat 4298.096 kb on + strandat 4298.687 kb on + strandat 4298.688 kb on - strandat 4298.874 kb on + strandat 4298.874 kb on + strandat 4298.877 kb on + strandat 4299.521 kb on - strandat 4299.541 kb on + strandat 4299.565 kb on + strand, within ECD_04033at 4299.566 kb on - strand, within ECD_04033at 4299.663 kb on + strand, within ECD_04033at 4299.663 kb on + strand, within ECD_04033

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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4,298,070 - +0.2
4,298,070 - +0.2
4,298,070 - +0.8
4,298,070 - -0.1
4,298,070 - +0.6
4,298,074 + -1.3
4,298,074 + +0.1
4,298,094 + -0.8
4,298,094 + +0.1
4,298,094 + +1.4
4,298,096 + +0.3
4,298,096 + +0.2
4,298,096 + +0.5
4,298,096 + +0.7
4,298,096 + -0.3
4,298,687 + -1.9
4,298,688 - -0.8
4,298,874 + -0.3
4,298,874 + -0.1
4,298,877 + +0.7
4,299,521 - +0.1
4,299,541 + -0.0
4,299,565 + ECD_04033 0.10 +0.5
4,299,566 - ECD_04033 0.10 +1.7
4,299,663 + ECD_04033 0.19 +0.7
4,299,663 + ECD_04033 0.19 -0.0

Or see this region's nucleotide sequence