Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03993 and ECD_03994 are separated by 77 nucleotides ECD_03994 and ECD_03995 are separated by 570 nucleotides
ECD_03993: ECD_03993 - anaerobic class I fumarate hydratase (fumarase B), at 4,252,760 to 4,254,406
_03993
ECD_03994: ECD_03994 - C4-dicarboxylate transporter, anaerobic; DcuS co-sensor, at 4,254,484 to 4,255,824
_03994
ECD_03995: ECD_03995 - response regulator in two-component regulatory system with DcuS, at 4,256,395 to 4,257,114
_03995
Position (kb)
4254
4255
4256 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4253.534 kb on - strand, within ECD_03993 at 4253.889 kb on - strand, within ECD_03993 at 4253.921 kb on - strand, within ECD_03993 at 4253.943 kb on + strand, within ECD_03993 at 4253.943 kb on + strand, within ECD_03993 at 4253.944 kb on - strand, within ECD_03993 at 4253.991 kb on + strand, within ECD_03993 at 4253.991 kb on + strand, within ECD_03993 at 4253.991 kb on + strand, within ECD_03993 at 4253.991 kb on + strand, within ECD_03993 at 4253.992 kb on - strand, within ECD_03993 at 4253.992 kb on - strand, within ECD_03993 at 4253.992 kb on - strand, within ECD_03993 at 4253.992 kb on - strand, within ECD_03993 at 4253.998 kb on + strand, within ECD_03993 at 4253.999 kb on - strand, within ECD_03993 at 4254.000 kb on + strand, within ECD_03993 at 4254.153 kb on + strand, within ECD_03993 at 4254.154 kb on - strand, within ECD_03993 at 4254.154 kb on - strand, within ECD_03993 at 4254.154 kb on - strand, within ECD_03993 at 4254.339 kb on - strand at 4254.339 kb on - strand at 4254.339 kb on - strand at 4254.339 kb on - strand at 4254.342 kb on + strand at 4254.343 kb on - strand at 4254.343 kb on - strand at 4254.385 kb on - strand at 4254.406 kb on + strand at 4254.407 kb on - strand at 4254.407 kb on - strand at 4254.428 kb on + strand at 4254.429 kb on - strand at 4254.485 kb on + strand at 4254.485 kb on + strand at 4254.486 kb on - strand at 4254.486 kb on - strand at 4254.486 kb on - strand at 4254.487 kb on + strand at 4254.487 kb on + strand at 4254.497 kb on + strand at 4254.497 kb on + strand at 4254.656 kb on + strand, within ECD_03994 at 4254.657 kb on - strand, within ECD_03994 at 4254.692 kb on + strand, within ECD_03994 at 4254.693 kb on - strand, within ECD_03994 at 4254.795 kb on - strand, within ECD_03994 at 4254.849 kb on + strand, within ECD_03994 at 4254.849 kb on + strand, within ECD_03994 at 4254.849 kb on + strand, within ECD_03994 at 4254.850 kb on - strand, within ECD_03994 at 4254.850 kb on - strand, within ECD_03994 at 4254.942 kb on + strand, within ECD_03994 at 4254.943 kb on - strand, within ECD_03994 at 4254.972 kb on + strand, within ECD_03994 at 4254.973 kb on - strand, within ECD_03994 at 4254.996 kb on + strand, within ECD_03994 at 4254.996 kb on + strand, within ECD_03994 at 4255.167 kb on - strand, within ECD_03994 at 4255.172 kb on + strand, within ECD_03994 at 4255.172 kb on + strand, within ECD_03994 at 4255.173 kb on - strand, within ECD_03994 at 4255.173 kb on - strand, within ECD_03994 at 4255.458 kb on + strand, within ECD_03994 at 4255.472 kb on + strand, within ECD_03994 at 4255.472 kb on + strand, within ECD_03994 at 4255.473 kb on - strand, within ECD_03994 at 4255.473 kb on - strand, within ECD_03994 at 4255.530 kb on + strand, within ECD_03994 at 4255.562 kb on + strand, within ECD_03994 at 4255.562 kb on + strand, within ECD_03994 at 4255.562 kb on + strand, within ECD_03994 at 4255.563 kb on - strand, within ECD_03994 at 4255.690 kb on - strand, within ECD_03994 at 4255.741 kb on + strand at 4255.745 kb on - strand at 4255.778 kb on + strand at 4255.790 kb on - strand at 4255.796 kb on - strand at 4255.951 kb on - strand at 4256.292 kb on + strand at 4256.522 kb on + strand, within ECD_03995 at 4256.527 kb on - strand, within ECD_03995 at 4256.623 kb on + strand, within ECD_03995 at 4256.692 kb on + strand, within ECD_03995 at 4256.718 kb on - strand, within ECD_03995 at 4256.720 kb on + strand, within ECD_03995
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 4,253,534 - ECD_03993 0.47 +0.7 4,253,889 - ECD_03993 0.69 +0.0 4,253,921 - ECD_03993 0.70 +0.1 4,253,943 + ECD_03993 0.72 +0.4 4,253,943 + ECD_03993 0.72 +0.2 4,253,944 - ECD_03993 0.72 -0.1 4,253,991 + ECD_03993 0.75 -0.3 4,253,991 + ECD_03993 0.75 +0.1 4,253,991 + ECD_03993 0.75 +0.9 4,253,991 + ECD_03993 0.75 +0.4 4,253,992 - ECD_03993 0.75 -0.2 4,253,992 - ECD_03993 0.75 -0.4 4,253,992 - ECD_03993 0.75 +0.7 4,253,992 - ECD_03993 0.75 -0.5 4,253,998 + ECD_03993 0.75 -0.9 4,253,999 - ECD_03993 0.75 +0.1 4,254,000 + ECD_03993 0.75 +0.7 4,254,153 + ECD_03993 0.85 -0.2 4,254,154 - ECD_03993 0.85 -0.5 4,254,154 - ECD_03993 0.85 +0.8 4,254,154 - ECD_03993 0.85 -0.7 4,254,339 - -2.0 4,254,339 - +0.3 4,254,339 - +2.3 4,254,339 - +1.6 4,254,342 + +0.4 4,254,343 - -1.0 4,254,343 - +1.0 4,254,385 - +0.2 4,254,406 + -0.3 4,254,407 - -0.6 4,254,407 - +1.6 4,254,428 + +0.4 4,254,429 - -0.5 4,254,485 + -0.4 4,254,485 + +1.1 4,254,486 - -0.5 4,254,486 - +1.1 4,254,486 - -0.6 4,254,487 + +0.9 4,254,487 + +0.3 4,254,497 + +0.8 4,254,497 + +0.6 4,254,656 + ECD_03994 0.13 +0.3 4,254,657 - ECD_03994 0.13 +1.5 4,254,692 + ECD_03994 0.16 +0.1 4,254,693 - ECD_03994 0.16 -0.4 4,254,795 - ECD_03994 0.23 -0.8 4,254,849 + ECD_03994 0.27 +0.6 4,254,849 + ECD_03994 0.27 +0.9 4,254,849 + ECD_03994 0.27 +1.5 4,254,850 - ECD_03994 0.27 -2.0 4,254,850 - ECD_03994 0.27 -0.2 4,254,942 + ECD_03994 0.34 -0.2 4,254,943 - ECD_03994 0.34 -0.1 4,254,972 + ECD_03994 0.36 +0.0 4,254,973 - ECD_03994 0.36 -0.1 4,254,996 + ECD_03994 0.38 +0.1 4,254,996 + ECD_03994 0.38 +0.9 4,255,167 - ECD_03994 0.51 -0.4 4,255,172 + ECD_03994 0.51 +0.8 4,255,172 + ECD_03994 0.51 +0.1 4,255,173 - ECD_03994 0.51 +0.2 4,255,173 - ECD_03994 0.51 +0.1 4,255,458 + ECD_03994 0.73 +0.4 4,255,472 + ECD_03994 0.74 +0.3 4,255,472 + ECD_03994 0.74 +0.9 4,255,473 - ECD_03994 0.74 +0.3 4,255,473 - ECD_03994 0.74 +0.3 4,255,530 + ECD_03994 0.78 -0.8 4,255,562 + ECD_03994 0.80 +0.0 4,255,562 + ECD_03994 0.80 +0.2 4,255,562 + ECD_03994 0.80 -0.1 4,255,563 - ECD_03994 0.80 +0.2 4,255,690 - ECD_03994 0.90 +1.0 4,255,741 + -0.5 4,255,745 - -0.9 4,255,778 + +0.2 4,255,790 - +0.3 4,255,796 - -0.4 4,255,951 - -0.0 4,256,292 + -0.1 4,256,522 + ECD_03995 0.18 +0.8 4,256,527 - ECD_03995 0.18 -0.6 4,256,623 + ECD_03995 0.32 -0.1 4,256,692 + ECD_03995 0.41 +0.4 4,256,718 - ECD_03995 0.45 +0.1 4,256,720 + ECD_03995 0.45 -0.0
Or see this region's nucleotide sequence