Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03695 and ECD_03696 are separated by 40 nucleotides ECD_03696 and ECD_03697 are separated by 13 nucleotides ECD_03697 and ECD_03698 are separated by 268 nucleotides ECD_03698 and ECD_03699 are separated by 51 nucleotides ECD_03699 and ECD_03700 are separated by 164 nucleotides
ECD_03695: ECD_03695 - Magnesium and cobalt transport protein corA, at 3,895,077 to 3,895,253
_03695
ECD_03696: ECD_03696 - DUF2628 family putative inner membrane protein, at 3,895,294 to 3,895,674
_03696
ECD_03697: ECD_03697 - PRK11371 family inner membrane protein, at 3,895,688 to 3,895,894
_03697
ECD_03698: ECD_03698 - putative chloramphenical resistance permease, at 3,896,163 to 3,897,053
_03698
ECD_03699: ECD_03699 - 4HBT thioesterase family protein, at 3,897,105 to 3,897,572
_03699
ECD_03700: ECD_03700 - outer membrane phospholipase A, at 3,897,737 to 3,898,606
_03700
Position (kb)
3896
3897
3898 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3895.447 kb on - strand, within ECD_03696 at 3895.820 kb on - strand, within ECD_03697 at 3895.822 kb on - strand, within ECD_03697 at 3895.932 kb on - strand at 3896.086 kb on - strand at 3896.177 kb on + strand at 3896.186 kb on + strand at 3896.249 kb on + strand at 3896.272 kb on + strand, within ECD_03698 at 3896.328 kb on + strand, within ECD_03698 at 3896.329 kb on - strand, within ECD_03698 at 3896.477 kb on - strand, within ECD_03698 at 3896.477 kb on - strand, within ECD_03698 at 3896.514 kb on + strand, within ECD_03698 at 3896.515 kb on - strand, within ECD_03698 at 3896.563 kb on + strand, within ECD_03698 at 3896.564 kb on - strand, within ECD_03698 at 3896.564 kb on - strand, within ECD_03698 at 3896.564 kb on - strand, within ECD_03698 at 3896.600 kb on + strand, within ECD_03698 at 3896.601 kb on - strand, within ECD_03698 at 3896.601 kb on - strand, within ECD_03698 at 3896.604 kb on + strand, within ECD_03698 at 3896.605 kb on - strand, within ECD_03698 at 3896.605 kb on - strand, within ECD_03698 at 3896.605 kb on - strand, within ECD_03698 at 3896.605 kb on - strand, within ECD_03698 at 3896.605 kb on - strand, within ECD_03698 at 3896.732 kb on + strand, within ECD_03698 at 3896.733 kb on - strand, within ECD_03698 at 3896.737 kb on + strand, within ECD_03698 at 3896.759 kb on + strand, within ECD_03698 at 3896.959 kb on + strand, within ECD_03698 at 3896.959 kb on + strand, within ECD_03698 at 3896.962 kb on + strand, within ECD_03698 at 3896.963 kb on - strand, within ECD_03698 at 3896.977 kb on + strand at 3896.977 kb on + strand at 3896.977 kb on + strand at 3896.978 kb on - strand at 3896.978 kb on - strand at 3896.988 kb on + strand at 3897.005 kb on - strand at 3897.025 kb on - strand at 3897.111 kb on + strand at 3897.111 kb on + strand at 3897.111 kb on + strand at 3897.112 kb on - strand at 3897.112 kb on - strand at 3897.112 kb on - strand at 3897.112 kb on - strand at 3897.112 kb on - strand at 3897.112 kb on - strand at 3897.116 kb on + strand at 3897.117 kb on - strand at 3897.118 kb on + strand at 3897.118 kb on + strand at 3897.118 kb on + strand at 3897.118 kb on + strand at 3897.118 kb on + strand at 3897.118 kb on + strand at 3897.118 kb on + strand at 3897.118 kb on + strand at 3897.119 kb on - strand at 3897.119 kb on - strand at 3897.119 kb on - strand at 3897.119 kb on - strand at 3897.119 kb on - strand at 3897.119 kb on - strand at 3897.119 kb on - strand at 3897.140 kb on + strand at 3897.142 kb on + strand at 3897.142 kb on + strand at 3897.142 kb on + strand at 3897.143 kb on - strand at 3897.143 kb on - strand at 3897.143 kb on - strand at 3897.143 kb on - strand at 3897.221 kb on + strand, within ECD_03699 at 3897.298 kb on - strand, within ECD_03699 at 3897.298 kb on - strand, within ECD_03699 at 3897.298 kb on - strand, within ECD_03699 at 3897.335 kb on + strand, within ECD_03699 at 3897.335 kb on + strand, within ECD_03699 at 3897.335 kb on + strand, within ECD_03699 at 3897.336 kb on - strand, within ECD_03699 at 3897.534 kb on + strand at 3897.572 kb on + strand at 3897.573 kb on - strand at 3897.573 kb on - strand at 3897.573 kb on - strand at 3897.573 kb on - strand at 3897.581 kb on + strand at 3897.581 kb on + strand at 3897.581 kb on + strand at 3897.582 kb on - strand at 3897.582 kb on - strand at 3897.582 kb on - strand at 3897.582 kb on - strand at 3897.635 kb on + strand at 3897.636 kb on - strand at 3897.650 kb on + strand at 3897.669 kb on + strand at 3897.670 kb on - strand at 3897.670 kb on - strand at 3897.670 kb on - strand at 3897.673 kb on + strand at 3897.674 kb on - strand at 3897.674 kb on - strand at 3897.674 kb on - strand at 3897.772 kb on + strand at 3897.773 kb on - strand at 3897.773 kb on - strand at 3897.789 kb on + strand at 3897.789 kb on + strand at 3897.789 kb on + strand at 3897.790 kb on - strand at 3897.790 kb on - strand at 3897.790 kb on - strand at 3897.791 kb on + strand at 3897.791 kb on + strand at 3897.791 kb on + strand at 3897.791 kb on + strand at 3897.791 kb on + strand at 3897.791 kb on + strand at 3897.791 kb on + strand at 3897.792 kb on - strand at 3897.792 kb on - strand at 3897.792 kb on - strand at 3897.847 kb on + strand, within ECD_03700 at 3897.848 kb on - strand, within ECD_03700 at 3897.848 kb on - strand, within ECD_03700 at 3897.859 kb on + strand, within ECD_03700 at 3897.859 kb on + strand, within ECD_03700 at 3897.860 kb on - strand, within ECD_03700 at 3897.860 kb on - strand, within ECD_03700 at 3897.894 kb on - strand, within ECD_03700 at 3897.899 kb on + strand, within ECD_03700 at 3897.899 kb on + strand, within ECD_03700 at 3897.911 kb on + strand, within ECD_03700 at 3897.911 kb on + strand, within ECD_03700 at 3897.911 kb on + strand, within ECD_03700 at 3897.911 kb on + strand, within ECD_03700 at 3897.911 kb on + strand, within ECD_03700 at 3897.912 kb on - strand, within ECD_03700 at 3897.912 kb on - strand, within ECD_03700 at 3897.912 kb on - strand, within ECD_03700 at 3897.920 kb on + strand, within ECD_03700 at 3897.921 kb on - strand, within ECD_03700 at 3897.921 kb on - strand, within ECD_03700 at 3897.921 kb on - strand, within ECD_03700 at 3897.921 kb on - strand, within ECD_03700 at 3897.921 kb on - strand, within ECD_03700 at 3897.921 kb on - strand, within ECD_03700 at 3898.042 kb on - strand, within ECD_03700
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 3,895,447 - ECD_03696 0.40 +0.4 3,895,820 - ECD_03697 0.64 -0.1 3,895,822 - ECD_03697 0.65 +0.2 3,895,932 - +0.2 3,896,086 - +0.5 3,896,177 + -0.4 3,896,186 + +0.4 3,896,249 + -0.1 3,896,272 + ECD_03698 0.12 +0.4 3,896,328 + ECD_03698 0.19 -0.2 3,896,329 - ECD_03698 0.19 -0.0 3,896,477 - ECD_03698 0.35 -0.4 3,896,477 - ECD_03698 0.35 -0.2 3,896,514 + ECD_03698 0.39 +0.7 3,896,515 - ECD_03698 0.40 -1.3 3,896,563 + ECD_03698 0.45 +0.5 3,896,564 - ECD_03698 0.45 +0.1 3,896,564 - ECD_03698 0.45 +0.1 3,896,564 - ECD_03698 0.45 +0.1 3,896,600 + ECD_03698 0.49 -0.0 3,896,601 - ECD_03698 0.49 -0.5 3,896,601 - ECD_03698 0.49 +0.2 3,896,604 + ECD_03698 0.49 -2.3 3,896,605 - ECD_03698 0.50 -0.6 3,896,605 - ECD_03698 0.50 -1.0 3,896,605 - ECD_03698 0.50 -0.2 3,896,605 - ECD_03698 0.50 -0.9 3,896,605 - ECD_03698 0.50 -0.1 3,896,732 + ECD_03698 0.64 +0.3 3,896,733 - ECD_03698 0.64 -0.5 3,896,737 + ECD_03698 0.64 +0.3 3,896,759 + ECD_03698 0.67 +0.2 3,896,959 + ECD_03698 0.89 +0.1 3,896,959 + ECD_03698 0.89 +0.4 3,896,962 + ECD_03698 0.90 -0.1 3,896,963 - ECD_03698 0.90 +0.1 3,896,977 + +0.1 3,896,977 + +0.5 3,896,977 + +0.7 3,896,978 - -0.6 3,896,978 - +0.2 3,896,988 + -0.3 3,897,005 - +0.4 3,897,025 - -0.3 3,897,111 + +2.4 3,897,111 + +0.1 3,897,111 + +0.2 3,897,112 - -0.3 3,897,112 - +0.4 3,897,112 - +1.3 3,897,112 - -0.0 3,897,112 - -2.1 3,897,112 - -0.3 3,897,116 + +0.4 3,897,117 - -0.2 3,897,118 + -0.2 3,897,118 + +0.0 3,897,118 + +1.0 3,897,118 + -0.7 3,897,118 + -0.4 3,897,118 + +0.1 3,897,118 + -0.3 3,897,118 + -0.0 3,897,119 - +0.7 3,897,119 - -0.0 3,897,119 - +0.1 3,897,119 - +0.9 3,897,119 - -0.9 3,897,119 - +0.6 3,897,119 - +0.3 3,897,140 + -0.5 3,897,142 + -0.0 3,897,142 + +0.3 3,897,142 + +0.2 3,897,143 - +0.0 3,897,143 - +0.5 3,897,143 - -0.6 3,897,143 - -0.0 3,897,221 + ECD_03699 0.25 -0.9 3,897,298 - ECD_03699 0.41 +0.1 3,897,298 - ECD_03699 0.41 +1.4 3,897,298 - ECD_03699 0.41 +0.3 3,897,335 + ECD_03699 0.49 -0.0 3,897,335 + ECD_03699 0.49 -0.0 3,897,335 + ECD_03699 0.49 -1.9 3,897,336 - ECD_03699 0.49 -0.3 3,897,534 + -1.1 3,897,572 + -0.4 3,897,573 - -0.7 3,897,573 - +0.7 3,897,573 - -0.4 3,897,573 - +0.2 3,897,581 + +0.2 3,897,581 + -1.8 3,897,581 + -0.1 3,897,582 - +0.6 3,897,582 - +1.4 3,897,582 - +0.1 3,897,582 - +0.2 3,897,635 + +0.4 3,897,636 - +0.2 3,897,650 + +0.5 3,897,669 + +0.4 3,897,670 - +0.4 3,897,670 - -0.8 3,897,670 - -0.5 3,897,673 + -0.4 3,897,674 - +0.4 3,897,674 - -0.7 3,897,674 - +0.1 3,897,772 + -0.5 3,897,773 - -0.7 3,897,773 - +2.0 3,897,789 + -0.9 3,897,789 + +0.9 3,897,789 + +1.7 3,897,790 - +0.3 3,897,790 - +0.2 3,897,790 - -0.0 3,897,791 + +0.8 3,897,791 + +0.9 3,897,791 + +0.5 3,897,791 + +1.6 3,897,791 + -0.1 3,897,791 + -1.1 3,897,791 + -0.1 3,897,792 - -0.3 3,897,792 - -0.5 3,897,792 - -0.4 3,897,847 + ECD_03700 0.13 +0.3 3,897,848 - ECD_03700 0.13 +1.0 3,897,848 - ECD_03700 0.13 +0.6 3,897,859 + ECD_03700 0.14 +1.0 3,897,859 + ECD_03700 0.14 +1.4 3,897,860 - ECD_03700 0.14 -0.2 3,897,860 - ECD_03700 0.14 +0.6 3,897,894 - ECD_03700 0.18 +0.8 3,897,899 + ECD_03700 0.19 -0.1 3,897,899 + ECD_03700 0.19 -0.7 3,897,911 + ECD_03700 0.20 +0.4 3,897,911 + ECD_03700 0.20 -0.3 3,897,911 + ECD_03700 0.20 +0.3 3,897,911 + ECD_03700 0.20 -1.5 3,897,911 + ECD_03700 0.20 +0.4 3,897,912 - ECD_03700 0.20 +0.2 3,897,912 - ECD_03700 0.20 +0.4 3,897,912 - ECD_03700 0.20 +1.4 3,897,920 + ECD_03700 0.21 +0.3 3,897,921 - ECD_03700 0.21 +0.6 3,897,921 - ECD_03700 0.21 -0.2 3,897,921 - ECD_03700 0.21 +1.8 3,897,921 - ECD_03700 0.21 +0.1 3,897,921 - ECD_03700 0.21 -0.7 3,897,921 - ECD_03700 0.21 +0.1 3,898,042 - ECD_03700 0.35 +0.1
Or see this region's nucleotide sequence