Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03570 and ECD_03571 are separated by 305 nucleotides ECD_03571 and ECD_03572 are separated by 1 nucleotides ECD_03572 and ECD_03573 are separated by 100 nucleotides
ECD_03570: ECD_03570 - heat shock chaperone, at 3,755,805 to 3,756,218
_03570
ECD_03571: ECD_03571 - DUF1375 family outer membrane protein, at 3,756,524 to 3,756,856
_03571
ECD_03572: ECD_03572 - DUF3748 family protein, at 3,756,858 to 3,758,072
_03572
ECD_03573: ECD_03573 - colicin M resistance protein; FAD-binding protein, putative oxidoreductase, at 3,758,173 to 3,759,237
_03573
Position (kb)
3756
3757
3758
3759 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3755.866 kb on + strand, within ECD_03570 at 3755.866 kb on + strand, within ECD_03570 at 3755.866 kb on + strand, within ECD_03570 at 3755.867 kb on - strand, within ECD_03570 at 3755.880 kb on + strand, within ECD_03570 at 3755.881 kb on - strand, within ECD_03570 at 3755.888 kb on + strand, within ECD_03570 at 3755.965 kb on + strand, within ECD_03570 at 3755.965 kb on + strand, within ECD_03570 at 3755.965 kb on + strand, within ECD_03570 at 3755.966 kb on - strand, within ECD_03570 at 3755.966 kb on - strand, within ECD_03570 at 3755.966 kb on - strand, within ECD_03570 at 3755.966 kb on - strand, within ECD_03570 at 3755.966 kb on - strand, within ECD_03570 at 3755.966 kb on - strand, within ECD_03570 at 3756.018 kb on - strand, within ECD_03570 at 3756.068 kb on + strand, within ECD_03570 at 3756.068 kb on + strand, within ECD_03570 at 3756.107 kb on + strand, within ECD_03570 at 3756.110 kb on - strand, within ECD_03570 at 3756.129 kb on - strand, within ECD_03570 at 3756.190 kb on + strand at 3756.202 kb on - strand at 3756.202 kb on - strand at 3756.212 kb on + strand at 3756.213 kb on - strand at 3756.219 kb on - strand at 3756.225 kb on + strand at 3756.226 kb on - strand at 3756.249 kb on + strand at 3756.249 kb on + strand at 3756.250 kb on - strand at 3756.250 kb on - strand at 3756.250 kb on - strand at 3756.250 kb on - strand at 3756.313 kb on - strand at 3756.320 kb on - strand at 3756.354 kb on - strand at 3756.378 kb on + strand at 3756.378 kb on + strand at 3756.385 kb on + strand at 3756.385 kb on + strand at 3756.385 kb on + strand at 3756.386 kb on - strand at 3756.392 kb on + strand at 3756.447 kb on + strand at 3756.448 kb on - strand at 3756.448 kb on - strand at 3756.460 kb on - strand at 3756.460 kb on - strand at 3756.479 kb on + strand at 3756.480 kb on - strand at 3756.480 kb on - strand at 3756.482 kb on - strand at 3756.521 kb on - strand at 3756.524 kb on - strand at 3756.528 kb on + strand at 3756.528 kb on + strand at 3756.543 kb on + strand at 3756.544 kb on - strand at 3756.555 kb on + strand at 3756.555 kb on + strand at 3756.555 kb on + strand at 3756.556 kb on - strand at 3756.686 kb on - strand, within ECD_03571 at 3756.827 kb on - strand at 3756.850 kb on + strand at 3756.851 kb on - strand at 3756.976 kb on + strand at 3756.977 kb on - strand at 3756.977 kb on - strand at 3757.128 kb on - strand, within ECD_03572 at 3757.151 kb on + strand, within ECD_03572 at 3757.225 kb on - strand, within ECD_03572 at 3757.360 kb on - strand, within ECD_03572 at 3757.360 kb on - strand, within ECD_03572 at 3757.456 kb on + strand, within ECD_03572 at 3757.456 kb on + strand, within ECD_03572 at 3757.457 kb on - strand, within ECD_03572 at 3757.457 kb on - strand, within ECD_03572 at 3757.457 kb on - strand, within ECD_03572 at 3757.506 kb on - strand, within ECD_03572 at 3757.537 kb on + strand, within ECD_03572 at 3757.538 kb on - strand, within ECD_03572 at 3757.560 kb on + strand, within ECD_03572 at 3757.560 kb on + strand, within ECD_03572 at 3757.560 kb on + strand, within ECD_03572 at 3757.560 kb on + strand, within ECD_03572 at 3757.632 kb on + strand, within ECD_03572 at 3757.632 kb on + strand, within ECD_03572 at 3757.632 kb on + strand, within ECD_03572 at 3757.632 kb on + strand, within ECD_03572 at 3757.632 kb on + strand, within ECD_03572 at 3757.632 kb on + strand, within ECD_03572 at 3757.632 kb on + strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.633 kb on - strand, within ECD_03572 at 3757.643 kb on + strand, within ECD_03572 at 3757.645 kb on + strand, within ECD_03572 at 3757.645 kb on + strand, within ECD_03572 at 3757.645 kb on + strand, within ECD_03572 at 3757.645 kb on + strand, within ECD_03572 at 3757.645 kb on + strand, within ECD_03572 at 3757.646 kb on - strand, within ECD_03572 at 3757.646 kb on - strand, within ECD_03572 at 3757.649 kb on + strand, within ECD_03572 at 3757.650 kb on - strand, within ECD_03572 at 3757.719 kb on - strand, within ECD_03572 at 3757.846 kb on + strand, within ECD_03572 at 3757.846 kb on + strand, within ECD_03572 at 3757.847 kb on - strand, within ECD_03572 at 3757.847 kb on - strand, within ECD_03572 at 3757.847 kb on - strand, within ECD_03572 at 3757.847 kb on - strand, within ECD_03572 at 3757.906 kb on + strand, within ECD_03572 at 3757.906 kb on + strand, within ECD_03572 at 3757.906 kb on + strand, within ECD_03572 at 3757.906 kb on + strand, within ECD_03572 at 3757.907 kb on - strand, within ECD_03572 at 3757.910 kb on + strand, within ECD_03572 at 3757.911 kb on - strand, within ECD_03572 at 3757.935 kb on - strand, within ECD_03572 at 3757.992 kb on + strand at 3758.021 kb on + strand at 3758.021 kb on + strand at 3758.022 kb on - strand at 3758.027 kb on + strand at 3758.061 kb on + strand at 3758.087 kb on - strand at 3758.108 kb on + strand at 3758.108 kb on + strand at 3758.108 kb on + strand at 3758.108 kb on + strand at 3758.109 kb on - strand at 3758.109 kb on - strand at 3758.109 kb on - strand at 3758.137 kb on + strand at 3758.137 kb on + strand at 3758.137 kb on + strand at 3758.138 kb on - strand at 3758.347 kb on - strand, within ECD_03573 at 3758.440 kb on - strand, within ECD_03573 at 3758.444 kb on - strand, within ECD_03573 at 3758.444 kb on - strand, within ECD_03573 at 3758.444 kb on - strand, within ECD_03573 at 3758.455 kb on + strand, within ECD_03573 at 3758.456 kb on - strand, within ECD_03573 at 3758.457 kb on + strand, within ECD_03573 at 3758.463 kb on + strand, within ECD_03573 at 3758.464 kb on - strand, within ECD_03573 at 3758.466 kb on + strand, within ECD_03573 at 3758.467 kb on - strand, within ECD_03573 at 3758.524 kb on + strand, within ECD_03573 at 3758.565 kb on + strand, within ECD_03573 at 3758.565 kb on + strand, within ECD_03573 at 3758.565 kb on + strand, within ECD_03573 at 3758.607 kb on + strand, within ECD_03573 at 3758.607 kb on + strand, within ECD_03573 at 3758.608 kb on - strand, within ECD_03573 at 3758.688 kb on + strand, within ECD_03573 at 3758.692 kb on + strand, within ECD_03573 at 3758.692 kb on + strand, within ECD_03573 at 3758.693 kb on - strand, within ECD_03573 at 3758.777 kb on - strand, within ECD_03573 at 3758.787 kb on + strand, within ECD_03573 at 3758.808 kb on + strand, within ECD_03573 at 3758.809 kb on - strand, within ECD_03573 at 3759.004 kb on - strand, within ECD_03573 at 3759.030 kb on + strand, within ECD_03573 at 3759.030 kb on + strand, within ECD_03573 at 3759.030 kb on + strand, within ECD_03573 at 3759.031 kb on - strand, within ECD_03573 at 3759.031 kb on - strand, within ECD_03573 at 3759.031 kb on - strand, within ECD_03573 at 3759.031 kb on - strand, within ECD_03573 at 3759.031 kb on - strand, within ECD_03573 at 3759.031 kb on - strand, within ECD_03573 at 3759.031 kb on - strand, within ECD_03573 at 3759.031 kb on - strand, within ECD_03573 at 3759.034 kb on + strand, within ECD_03573 at 3759.034 kb on + strand, within ECD_03573 at 3759.035 kb on - strand, within ECD_03573
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 3,755,866 + ECD_03570 0.15 -0.9 3,755,866 + ECD_03570 0.15 +0.0 3,755,866 + ECD_03570 0.15 +0.4 3,755,867 - ECD_03570 0.15 +0.2 3,755,880 + ECD_03570 0.18 +0.4 3,755,881 - ECD_03570 0.18 +0.8 3,755,888 + ECD_03570 0.20 +0.8 3,755,965 + ECD_03570 0.39 +0.5 3,755,965 + ECD_03570 0.39 -0.3 3,755,965 + ECD_03570 0.39 -0.7 3,755,966 - ECD_03570 0.39 +0.6 3,755,966 - ECD_03570 0.39 -0.1 3,755,966 - ECD_03570 0.39 +0.1 3,755,966 - ECD_03570 0.39 -0.5 3,755,966 - ECD_03570 0.39 +0.8 3,755,966 - ECD_03570 0.39 -0.7 3,756,018 - ECD_03570 0.51 +1.1 3,756,068 + ECD_03570 0.64 -0.2 3,756,068 + ECD_03570 0.64 +0.3 3,756,107 + ECD_03570 0.73 +0.2 3,756,110 - ECD_03570 0.74 +0.4 3,756,129 - ECD_03570 0.78 +0.5 3,756,190 + +0.4 3,756,202 - +0.3 3,756,202 - +0.8 3,756,212 + +0.3 3,756,213 - -0.3 3,756,219 - -0.0 3,756,225 + +0.1 3,756,226 - +0.2 3,756,249 + +0.0 3,756,249 + +0.5 3,756,250 - +0.1 3,756,250 - +0.0 3,756,250 - +0.9 3,756,250 - +0.1 3,756,313 - +0.4 3,756,320 - -0.0 3,756,354 - -0.3 3,756,378 + +0.5 3,756,378 + -0.9 3,756,385 + +0.0 3,756,385 + +0.6 3,756,385 + +0.4 3,756,386 - +0.2 3,756,392 + -0.4 3,756,447 + -0.2 3,756,448 - +0.1 3,756,448 - +0.4 3,756,460 - -0.5 3,756,460 - -0.0 3,756,479 + -0.1 3,756,480 - +0.3 3,756,480 - -0.1 3,756,482 - +0.0 3,756,521 - -0.2 3,756,524 - +0.3 3,756,528 + -0.6 3,756,528 + +0.1 3,756,543 + -0.2 3,756,544 - +1.2 3,756,555 + +0.1 3,756,555 + +0.3 3,756,555 + +0.4 3,756,556 - +0.3 3,756,686 - ECD_03571 0.49 -1.1 3,756,827 - +0.9 3,756,850 + -0.8 3,756,851 - +0.2 3,756,976 + +0.5 3,756,977 - +0.5 3,756,977 - +0.8 3,757,128 - ECD_03572 0.22 +0.2 3,757,151 + ECD_03572 0.24 +0.2 3,757,225 - ECD_03572 0.30 -1.0 3,757,360 - ECD_03572 0.41 +0.3 3,757,360 - ECD_03572 0.41 +0.3 3,757,456 + ECD_03572 0.49 -2.5 3,757,456 + ECD_03572 0.49 +1.1 3,757,457 - ECD_03572 0.49 +0.5 3,757,457 - ECD_03572 0.49 +0.4 3,757,457 - ECD_03572 0.49 +0.3 3,757,506 - ECD_03572 0.53 -0.3 3,757,537 + ECD_03572 0.56 -0.9 3,757,538 - ECD_03572 0.56 +0.6 3,757,560 + ECD_03572 0.58 +0.0 3,757,560 + ECD_03572 0.58 -1.2 3,757,560 + ECD_03572 0.58 +0.0 3,757,560 + ECD_03572 0.58 -0.1 3,757,632 + ECD_03572 0.64 +1.8 3,757,632 + ECD_03572 0.64 +0.2 3,757,632 + ECD_03572 0.64 -0.2 3,757,632 + ECD_03572 0.64 +0.2 3,757,632 + ECD_03572 0.64 +0.1 3,757,632 + ECD_03572 0.64 -0.3 3,757,632 + ECD_03572 0.64 -0.8 3,757,633 - ECD_03572 0.64 -0.0 3,757,633 - ECD_03572 0.64 +0.1 3,757,633 - ECD_03572 0.64 +1.6 3,757,633 - ECD_03572 0.64 +0.2 3,757,633 - ECD_03572 0.64 -0.1 3,757,633 - ECD_03572 0.64 +0.2 3,757,633 - ECD_03572 0.64 -0.1 3,757,633 - ECD_03572 0.64 +0.0 3,757,633 - ECD_03572 0.64 -0.5 3,757,633 - ECD_03572 0.64 -0.8 3,757,633 - ECD_03572 0.64 -1.3 3,757,643 + ECD_03572 0.65 +0.2 3,757,645 + ECD_03572 0.65 +0.6 3,757,645 + ECD_03572 0.65 -0.2 3,757,645 + ECD_03572 0.65 -0.2 3,757,645 + ECD_03572 0.65 +0.0 3,757,645 + ECD_03572 0.65 -0.2 3,757,646 - ECD_03572 0.65 -0.5 3,757,646 - ECD_03572 0.65 -0.5 3,757,649 + ECD_03572 0.65 +0.4 3,757,650 - ECD_03572 0.65 -1.2 3,757,719 - ECD_03572 0.71 +0.1 3,757,846 + ECD_03572 0.81 -0.2 3,757,846 + ECD_03572 0.81 -0.4 3,757,847 - ECD_03572 0.81 -0.4 3,757,847 - ECD_03572 0.81 -0.2 3,757,847 - ECD_03572 0.81 +0.7 3,757,847 - ECD_03572 0.81 +0.5 3,757,906 + ECD_03572 0.86 +1.1 3,757,906 + ECD_03572 0.86 +0.6 3,757,906 + ECD_03572 0.86 -0.9 3,757,906 + ECD_03572 0.86 +0.6 3,757,907 - ECD_03572 0.86 -0.2 3,757,910 + ECD_03572 0.87 -0.3 3,757,911 - ECD_03572 0.87 -0.3 3,757,935 - ECD_03572 0.89 +0.1 3,757,992 + +0.6 3,758,021 + -0.6 3,758,021 + +1.0 3,758,022 - +1.0 3,758,027 + +0.1 3,758,061 + -0.1 3,758,087 - +0.2 3,758,108 + -0.3 3,758,108 + +0.5 3,758,108 + +0.4 3,758,108 + -0.2 3,758,109 - +0.1 3,758,109 - +0.3 3,758,109 - -0.3 3,758,137 + +0.6 3,758,137 + -0.2 3,758,137 + +0.4 3,758,138 - +0.1 3,758,347 - ECD_03573 0.16 -1.1 3,758,440 - ECD_03573 0.25 -0.5 3,758,444 - ECD_03573 0.25 +0.2 3,758,444 - ECD_03573 0.25 +0.4 3,758,444 - ECD_03573 0.25 -0.4 3,758,455 + ECD_03573 0.26 +0.7 3,758,456 - ECD_03573 0.27 -0.7 3,758,457 + ECD_03573 0.27 +1.2 3,758,463 + ECD_03573 0.27 +0.3 3,758,464 - ECD_03573 0.27 +0.6 3,758,466 + ECD_03573 0.28 -0.1 3,758,467 - ECD_03573 0.28 -0.1 3,758,524 + ECD_03573 0.33 -0.8 3,758,565 + ECD_03573 0.37 +0.3 3,758,565 + ECD_03573 0.37 +0.0 3,758,565 + ECD_03573 0.37 +0.4 3,758,607 + ECD_03573 0.41 -0.2 3,758,607 + ECD_03573 0.41 +0.4 3,758,608 - ECD_03573 0.41 -0.2 3,758,688 + ECD_03573 0.48 +0.3 3,758,692 + ECD_03573 0.49 -0.2 3,758,692 + ECD_03573 0.49 -0.5 3,758,693 - ECD_03573 0.49 -0.6 3,758,777 - ECD_03573 0.57 +0.2 3,758,787 + ECD_03573 0.58 +0.2 3,758,808 + ECD_03573 0.60 -0.1 3,758,809 - ECD_03573 0.60 -0.7 3,759,004 - ECD_03573 0.78 +0.3 3,759,030 + ECD_03573 0.80 +0.2 3,759,030 + ECD_03573 0.80 -0.4 3,759,030 + ECD_03573 0.80 +0.4 3,759,031 - ECD_03573 0.81 +0.4 3,759,031 - ECD_03573 0.81 -1.2 3,759,031 - ECD_03573 0.81 -0.1 3,759,031 - ECD_03573 0.81 +0.8 3,759,031 - ECD_03573 0.81 +1.1 3,759,031 - ECD_03573 0.81 +0.7 3,759,031 - ECD_03573 0.81 -0.4 3,759,031 - ECD_03573 0.81 +0.2 3,759,034 + ECD_03573 0.81 +0.4 3,759,034 + ECD_03573 0.81 +1.8 3,759,035 - ECD_03573 0.81 -0.7
Or see this region's nucleotide sequence