Strain Fitness in Escherichia coli BL21 around ECD_03523

Experiment: NophageControl

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03522 and ECD_03523 are separated by 53 nucleotidesECD_03523 and ECD_03524 overlap by 154 nucleotidesECD_03524 and ECD_03525 are separated by 116 nucleotidesECD_03525 and ECD_03526 are separated by 84 nucleotides ECD_03522: ECD_03522 - Single-strand binding protein (SSB) (Helix-destabilizing protein), at 3,712,806 to 3,713,291 _03522 ECD_03523: ECD_03523 - TrbC-like protein, at 3,713,345 to 3,714,508 _03523 ECD_03524: ECD_03524 - transposase, at 3,714,355 to 3,714,702 _03524 ECD_03525: ECD_03525 - hypothetical protein, at 3,714,819 to 3,715,157 _03525 ECD_03526: ECD_03526 - hypothetical protein, at 3,715,242 to 3,715,397 _03526 Position (kb) 3713 3714 3715Strain fitness (log2 ratio) -1 0 1at 3712.380 kb on - strandat 3712.800 kb on + strandat 3712.873 kb on - strand, within ECD_03522at 3712.873 kb on - strand, within ECD_03522at 3712.873 kb on - strand, within ECD_03522at 3713.006 kb on - strand, within ECD_03522at 3713.040 kb on + strand, within ECD_03522at 3713.040 kb on + strand, within ECD_03522at 3713.041 kb on - strand, within ECD_03522at 3713.280 kb on - strandat 3713.373 kb on + strandat 3713.512 kb on + strand, within ECD_03523at 3713.633 kb on + strand, within ECD_03523at 3713.634 kb on - strand, within ECD_03523at 3713.773 kb on + strand, within ECD_03523at 3713.927 kb on + strand, within ECD_03523at 3713.927 kb on + strand, within ECD_03523at 3713.927 kb on + strand, within ECD_03523at 3713.927 kb on + strand, within ECD_03523at 3713.928 kb on - strand, within ECD_03523at 3713.928 kb on - strand, within ECD_03523at 3713.928 kb on - strand, within ECD_03523at 3713.928 kb on - strand, within ECD_03523at 3713.928 kb on - strand, within ECD_03523at 3713.928 kb on - strand, within ECD_03523at 3713.928 kb on - strand, within ECD_03523at 3713.928 kb on - strand, within ECD_03523at 3713.928 kb on - strand, within ECD_03523at 3713.928 kb on - strand, within ECD_03523at 3713.929 kb on + strand, within ECD_03523at 3713.929 kb on + strand, within ECD_03523at 3713.930 kb on - strand, within ECD_03523at 3714.130 kb on + strand, within ECD_03523at 3714.131 kb on - strand, within ECD_03523at 3714.131 kb on - strand, within ECD_03523at 3714.131 kb on - strand, within ECD_03523at 3714.134 kb on + strand, within ECD_03523at 3714.134 kb on + strand, within ECD_03523at 3714.134 kb on + strand, within ECD_03523at 3714.134 kb on + strand, within ECD_03523at 3714.134 kb on + strand, within ECD_03523at 3714.135 kb on - strand, within ECD_03523at 3714.186 kb on - strand, within ECD_03523at 3714.186 kb on - strand, within ECD_03523at 3714.406 kb on + strandat 3714.407 kb on - strandat 3714.409 kb on + strandat 3714.414 kb on + strandat 3714.415 kb on - strandat 3714.415 kb on - strandat 3714.415 kb on - strandat 3714.415 kb on - strandat 3714.415 kb on - strandat 3714.480 kb on + strandat 3714.480 kb on + strandat 3714.480 kb on + strandat 3714.480 kb on + strandat 3714.481 kb on - strandat 3714.481 kb on - strandat 3714.481 kb on - strandat 3714.481 kb on - strandat 3714.598 kb on - strand, within ECD_03524at 3714.607 kb on + strand, within ECD_03524at 3714.607 kb on + strand, within ECD_03524at 3714.608 kb on - strand, within ECD_03524at 3714.608 kb on - strand, within ECD_03524at 3714.608 kb on - strand, within ECD_03524at 3714.646 kb on - strand, within ECD_03524at 3714.667 kb on + strand, within ECD_03524at 3714.735 kb on + strandat 3714.740 kb on + strandat 3714.800 kb on + strandat 3714.846 kb on + strandat 3714.846 kb on + strandat 3714.891 kb on - strand, within ECD_03525at 3714.897 kb on - strand, within ECD_03525at 3714.963 kb on + strand, within ECD_03525at 3714.965 kb on + strand, within ECD_03525at 3714.974 kb on + strand, within ECD_03525at 3714.994 kb on + strand, within ECD_03525at 3714.994 kb on + strand, within ECD_03525at 3715.045 kb on + strand, within ECD_03525at 3715.057 kb on + strand, within ECD_03525at 3715.057 kb on + strand, within ECD_03525at 3715.057 kb on + strand, within ECD_03525at 3715.058 kb on - strand, within ECD_03525at 3715.058 kb on - strand, within ECD_03525at 3715.060 kb on + strand, within ECD_03525at 3715.060 kb on + strand, within ECD_03525at 3715.060 kb on + strand, within ECD_03525at 3715.061 kb on - strand, within ECD_03525at 3715.061 kb on - strand, within ECD_03525at 3715.153 kb on + strandat 3715.153 kb on + strandat 3715.153 kb on + strandat 3715.154 kb on - strandat 3715.154 kb on - strandat 3715.257 kb on - strandat 3715.260 kb on - strand, within ECD_03526at 3715.260 kb on - strand, within ECD_03526at 3715.357 kb on + strand, within ECD_03526at 3715.358 kb on - strand, within ECD_03526at 3715.358 kb on - strand, within ECD_03526at 3715.380 kb on - strand, within ECD_03526at 3715.380 kb on - strand, within ECD_03526at 3715.419 kb on + strandat 3715.420 kb on - strandat 3715.420 kb on - strandat 3715.420 kb on - strandat 3715.421 kb on + strandat 3715.421 kb on + strandat 3715.422 kb on - strandat 3715.423 kb on + strandat 3715.424 kb on - strandat 3715.424 kb on - strandat 3715.429 kb on + strandat 3715.429 kb on + strandat 3715.430 kb on - strandat 3715.430 kb on - strandat 3715.430 kb on - strandat 3715.437 kb on - strandat 3715.437 kb on - strandat 3715.439 kb on + strandat 3715.440 kb on - strandat 3715.440 kb on - strandat 3715.444 kb on - strandat 3715.444 kb on - strandat 3715.445 kb on + strandat 3715.445 kb on + strandat 3715.446 kb on - strandat 3715.446 kb on - strandat 3715.458 kb on + strandat 3715.458 kb on + strandat 3715.459 kb on - strandat 3715.459 kb on - strandat 3715.459 kb on - strandat 3715.459 kb on - strandat 3715.470 kb on + strandat 3715.475 kb on + strandat 3715.476 kb on - strandat 3715.476 kb on - strandat 3715.478 kb on + strandat 3715.478 kb on + strandat 3715.478 kb on + strandat 3715.479 kb on - strandat 3715.479 kb on - strandat 3715.479 kb on - strandat 3715.479 kb on - strandat 3715.479 kb on - strandat 3715.479 kb on - strandat 3715.479 kb on - strandat 3715.498 kb on - strandat 3715.498 kb on - strandat 3715.498 kb on - strandat 3715.508 kb on + strandat 3715.508 kb on + strandat 3715.508 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
remove
3,712,380 - +0.1
3,712,800 + +0.3
3,712,873 - ECD_03522 0.14 -0.6
3,712,873 - ECD_03522 0.14 -0.2
3,712,873 - ECD_03522 0.14 -0.3
3,713,006 - ECD_03522 0.41 +0.6
3,713,040 + ECD_03522 0.48 -0.6
3,713,040 + ECD_03522 0.48 +0.0
3,713,041 - ECD_03522 0.48 +1.5
3,713,280 - -0.0
3,713,373 + -1.2
3,713,512 + ECD_03523 0.14 +0.4
3,713,633 + ECD_03523 0.25 -0.1
3,713,634 - ECD_03523 0.25 +0.1
3,713,773 + ECD_03523 0.37 +0.2
3,713,927 + ECD_03523 0.50 -0.5
3,713,927 + ECD_03523 0.50 -0.3
3,713,927 + ECD_03523 0.50 +0.5
3,713,927 + ECD_03523 0.50 -0.9
3,713,928 - ECD_03523 0.50 +0.2
3,713,928 - ECD_03523 0.50 -0.2
3,713,928 - ECD_03523 0.50 +0.6
3,713,928 - ECD_03523 0.50 -0.2
3,713,928 - ECD_03523 0.50 +0.7
3,713,928 - ECD_03523 0.50 -0.1
3,713,928 - ECD_03523 0.50 -0.2
3,713,928 - ECD_03523 0.50 -1.6
3,713,928 - ECD_03523 0.50 +0.2
3,713,928 - ECD_03523 0.50 -0.3
3,713,929 + ECD_03523 0.50 -0.4
3,713,929 + ECD_03523 0.50 -0.1
3,713,930 - ECD_03523 0.50 -0.2
3,714,130 + ECD_03523 0.67 +0.1
3,714,131 - ECD_03523 0.68 -0.7
3,714,131 - ECD_03523 0.68 +0.3
3,714,131 - ECD_03523 0.68 -0.1
3,714,134 + ECD_03523 0.68 +0.4
3,714,134 + ECD_03523 0.68 -0.5
3,714,134 + ECD_03523 0.68 -0.1
3,714,134 + ECD_03523 0.68 -1.2
3,714,134 + ECD_03523 0.68 +0.3
3,714,135 - ECD_03523 0.68 +0.3
3,714,186 - ECD_03523 0.72 +0.2
3,714,186 - ECD_03523 0.72 -0.2
3,714,406 + +0.0
3,714,407 - +0.3
3,714,409 + -0.5
3,714,414 + +0.2
3,714,415 - +0.7
3,714,415 - -0.5
3,714,415 - -0.7
3,714,415 - -0.8
3,714,415 - +0.2
3,714,480 + -0.2
3,714,480 + +0.3
3,714,480 + -0.2
3,714,480 + -0.2
3,714,481 - +0.4
3,714,481 - +0.5
3,714,481 - +0.1
3,714,481 - +0.7
3,714,598 - ECD_03524 0.70 -0.0
3,714,607 + ECD_03524 0.72 -0.8
3,714,607 + ECD_03524 0.72 -0.5
3,714,608 - ECD_03524 0.73 +0.1
3,714,608 - ECD_03524 0.73 +0.3
3,714,608 - ECD_03524 0.73 -0.1
3,714,646 - ECD_03524 0.84 -1.3
3,714,667 + ECD_03524 0.90 +0.2
3,714,735 + +0.2
3,714,740 + -1.7
3,714,800 + +0.6
3,714,846 + +0.5
3,714,846 + +0.5
3,714,891 - ECD_03525 0.21 +1.5
3,714,897 - ECD_03525 0.23 +0.3
3,714,963 + ECD_03525 0.42 -0.0
3,714,965 + ECD_03525 0.43 +0.1
3,714,974 + ECD_03525 0.46 -0.0
3,714,994 + ECD_03525 0.52 +0.9
3,714,994 + ECD_03525 0.52 -0.0
3,715,045 + ECD_03525 0.67 +0.3
3,715,057 + ECD_03525 0.70 -0.3
3,715,057 + ECD_03525 0.70 -0.1
3,715,057 + ECD_03525 0.70 +0.0
3,715,058 - ECD_03525 0.71 -0.2
3,715,058 - ECD_03525 0.71 -0.6
3,715,060 + ECD_03525 0.71 +0.2
3,715,060 + ECD_03525 0.71 +0.4
3,715,060 + ECD_03525 0.71 -1.1
3,715,061 - ECD_03525 0.71 +0.5
3,715,061 - ECD_03525 0.71 -1.2
3,715,153 + +0.6
3,715,153 + -0.1
3,715,153 + -0.6
3,715,154 - -0.0
3,715,154 - +0.1
3,715,257 - +0.1
3,715,260 - ECD_03526 0.12 +1.3
3,715,260 - ECD_03526 0.12 +0.5
3,715,357 + ECD_03526 0.74 +1.3
3,715,358 - ECD_03526 0.74 -0.3
3,715,358 - ECD_03526 0.74 +0.6
3,715,380 - ECD_03526 0.88 +0.2
3,715,380 - ECD_03526 0.88 +0.1
3,715,419 + -0.3
3,715,420 - -0.2
3,715,420 - +0.8
3,715,420 - -0.4
3,715,421 + -0.8
3,715,421 + -0.8
3,715,422 - -0.2
3,715,423 + +0.9
3,715,424 - +0.0
3,715,424 - +0.3
3,715,429 + -0.1
3,715,429 + -0.4
3,715,430 - -0.2
3,715,430 - +0.4
3,715,430 - -0.1
3,715,437 - -0.4
3,715,437 - +0.1
3,715,439 + -0.4
3,715,440 - -1.1
3,715,440 - +0.3
3,715,444 - +0.2
3,715,444 - +0.1
3,715,445 + -0.5
3,715,445 + +0.1
3,715,446 - -0.3
3,715,446 - -0.3
3,715,458 + +0.5
3,715,458 + -0.4
3,715,459 - -0.3
3,715,459 - +0.1
3,715,459 - -0.1
3,715,459 - -0.0
3,715,470 + +0.5
3,715,475 + -0.9
3,715,476 - -0.9
3,715,476 - +0.4
3,715,478 + -0.8
3,715,478 + -1.2
3,715,478 + -0.5
3,715,479 - +0.1
3,715,479 - -0.0
3,715,479 - -0.1
3,715,479 - -0.4
3,715,479 - -0.9
3,715,479 - +0.5
3,715,479 - +1.1
3,715,498 - -0.2
3,715,498 - -0.3
3,715,498 - +0.7
3,715,508 + -0.1
3,715,508 + -0.4
3,715,508 + -0.2

Or see this region's nucleotide sequence