Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03291 and ECD_03292 are separated by 332 nucleotides ECD_03292 and ECD_03293 are separated by 236 nucleotides
ECD_03291: ECD_03291 - putative oxidoreductase, at 3,442,917 to 3,443,954
_03291
ECD_03292: ECD_03292 - aminoacyl nucleotide detoxifying acetyltransferase, at 3,444,287 to 3,444,775
_03292
ECD_03293: ECD_03293 - putative Hcp1 family polymorphic toxin protein; putative colicin-like DNase/tRNase activity, at 3,445,012 to 3,446,190
_03293
Position (kb)
3444
3445 Strain fitness (log2 ratio)
-2
-1
0
1 at 3443.406 kb on - strand, within ECD_03291 at 3443.420 kb on + strand, within ECD_03291 at 3443.421 kb on - strand, within ECD_03291 at 3443.437 kb on + strand, within ECD_03291 at 3443.775 kb on + strand, within ECD_03291 at 3443.775 kb on + strand, within ECD_03291 at 3443.775 kb on + strand, within ECD_03291 at 3443.776 kb on - strand, within ECD_03291 at 3443.873 kb on + strand at 3443.889 kb on + strand at 3443.889 kb on + strand at 3443.889 kb on + strand at 3443.890 kb on - strand at 3443.890 kb on - strand at 3443.890 kb on - strand at 3443.894 kb on - strand at 3443.894 kb on - strand at 3443.894 kb on - strand at 3443.933 kb on + strand at 3443.969 kb on + strand at 3443.970 kb on - strand at 3443.982 kb on + strand at 3443.989 kb on + strand at 3444.052 kb on - strand at 3444.101 kb on + strand at 3444.101 kb on + strand at 3444.102 kb on - strand at 3444.102 kb on - strand at 3444.173 kb on + strand at 3444.266 kb on + strand at 3444.298 kb on - strand at 3444.298 kb on - strand at 3444.298 kb on - strand at 3444.301 kb on - strand at 3444.301 kb on - strand at 3444.304 kb on - strand at 3444.304 kb on - strand at 3444.365 kb on + strand, within ECD_03292 at 3444.365 kb on + strand, within ECD_03292 at 3444.366 kb on - strand, within ECD_03292 at 3444.366 kb on - strand, within ECD_03292 at 3444.366 kb on - strand, within ECD_03292 at 3444.366 kb on - strand, within ECD_03292 at 3444.378 kb on + strand, within ECD_03292 at 3444.379 kb on - strand, within ECD_03292 at 3444.379 kb on - strand, within ECD_03292 at 3444.379 kb on - strand, within ECD_03292 at 3444.403 kb on + strand, within ECD_03292 at 3444.403 kb on + strand, within ECD_03292 at 3444.403 kb on + strand, within ECD_03292 at 3444.403 kb on + strand, within ECD_03292 at 3444.403 kb on + strand, within ECD_03292 at 3444.404 kb on - strand, within ECD_03292 at 3444.404 kb on - strand, within ECD_03292 at 3444.404 kb on - strand, within ECD_03292 at 3444.404 kb on - strand, within ECD_03292 at 3444.404 kb on - strand, within ECD_03292 at 3444.458 kb on - strand, within ECD_03292 at 3444.536 kb on - strand, within ECD_03292 at 3444.624 kb on + strand, within ECD_03292 at 3444.640 kb on - strand, within ECD_03292 at 3444.670 kb on + strand, within ECD_03292 at 3444.679 kb on + strand, within ECD_03292 at 3444.713 kb on - strand, within ECD_03292 at 3444.740 kb on + strand at 3444.740 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 3,443,406 - ECD_03291 0.47 -0.0 3,443,420 + ECD_03291 0.48 +0.2 3,443,421 - ECD_03291 0.49 +0.0 3,443,437 + ECD_03291 0.50 -0.0 3,443,775 + ECD_03291 0.83 +0.7 3,443,775 + ECD_03291 0.83 +0.4 3,443,775 + ECD_03291 0.83 +0.6 3,443,776 - ECD_03291 0.83 +0.4 3,443,873 + +0.1 3,443,889 + -2.3 3,443,889 + -0.1 3,443,889 + -0.1 3,443,890 - -0.2 3,443,890 - +0.2 3,443,890 - -1.1 3,443,894 - +1.6 3,443,894 - +0.3 3,443,894 - +0.2 3,443,933 + +0.3 3,443,969 + +0.6 3,443,970 - -0.3 3,443,982 + +0.1 3,443,989 + +0.4 3,444,052 - +0.4 3,444,101 + +0.2 3,444,101 + -1.8 3,444,102 - +0.6 3,444,102 - -0.2 3,444,173 + -0.7 3,444,266 + -0.5 3,444,298 - -0.9 3,444,298 - +0.4 3,444,298 - +0.9 3,444,301 - +0.6 3,444,301 - +1.1 3,444,304 - +0.1 3,444,304 - -0.1 3,444,365 + ECD_03292 0.16 -0.7 3,444,365 + ECD_03292 0.16 +0.5 3,444,366 - ECD_03292 0.16 +0.4 3,444,366 - ECD_03292 0.16 -0.1 3,444,366 - ECD_03292 0.16 +0.1 3,444,366 - ECD_03292 0.16 -0.7 3,444,378 + ECD_03292 0.19 -0.3 3,444,379 - ECD_03292 0.19 -0.1 3,444,379 - ECD_03292 0.19 +0.2 3,444,379 - ECD_03292 0.19 +0.6 3,444,403 + ECD_03292 0.24 +0.5 3,444,403 + ECD_03292 0.24 +0.5 3,444,403 + ECD_03292 0.24 -0.1 3,444,403 + ECD_03292 0.24 -0.1 3,444,403 + ECD_03292 0.24 +0.1 3,444,404 - ECD_03292 0.24 +0.0 3,444,404 - ECD_03292 0.24 -0.9 3,444,404 - ECD_03292 0.24 +1.1 3,444,404 - ECD_03292 0.24 +0.9 3,444,404 - ECD_03292 0.24 -0.5 3,444,458 - ECD_03292 0.35 -0.5 3,444,536 - ECD_03292 0.51 +0.5 3,444,624 + ECD_03292 0.69 +0.4 3,444,640 - ECD_03292 0.72 +1.3 3,444,670 + ECD_03292 0.78 +0.4 3,444,679 + ECD_03292 0.80 -0.1 3,444,713 - ECD_03292 0.87 -0.3 3,444,740 + -0.6 3,444,740 + +0.1
Or see this region's nucleotide sequence