Strain Fitness in Escherichia coli BL21 around ECD_03229

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03227 and ECD_03228 overlap by 82 nucleotidesECD_03228 and ECD_03229 are separated by 539 nucleotidesECD_03229 and ECD_03230 are separated by 11 nucleotidesECD_03230 and ECD_03231 are separated by 10 nucleotides ECD_03227: ECD_03227 - IS1 protein InsB, at 3,365,173 to 3,365,676 _03227 ECD_03228: ECD_03228 - IS1 protein InsA, at 3,365,595 to 3,365,870 _03228 ECD_03229: ECD_03229 - inner membrane protein, at 3,366,410 to 3,367,714 _03229 ECD_03230: ECD_03230 - DUF2620 family protein, at 3,367,726 to 3,368,079 _03230 ECD_03231: ECD_03231 - phosphotriesterase homology protein, at 3,368,090 to 3,368,968 _03231 Position (kb) 3366 3367 3368Strain fitness (log2 ratio) -1 0 1 2at 3365.895 kb on + strandat 3365.895 kb on + strandat 3365.947 kb on + strandat 3365.947 kb on + strandat 3365.947 kb on + strandat 3365.947 kb on + strandat 3365.947 kb on + strandat 3365.948 kb on - strandat 3365.948 kb on - strandat 3366.051 kb on - strandat 3366.053 kb on + strandat 3366.279 kb on + strandat 3366.279 kb on + strandat 3366.280 kb on - strandat 3366.280 kb on - strandat 3366.280 kb on - strandat 3366.294 kb on - strandat 3366.365 kb on + strandat 3366.398 kb on + strandat 3366.398 kb on + strandat 3366.399 kb on - strandat 3366.399 kb on - strandat 3366.412 kb on - strandat 3366.470 kb on + strandat 3366.532 kb on - strandat 3366.560 kb on - strand, within ECD_03229at 3366.623 kb on - strand, within ECD_03229at 3366.623 kb on - strand, within ECD_03229at 3366.721 kb on + strand, within ECD_03229at 3366.769 kb on - strand, within ECD_03229at 3366.791 kb on - strand, within ECD_03229at 3366.807 kb on + strand, within ECD_03229at 3366.808 kb on - strand, within ECD_03229at 3366.931 kb on - strand, within ECD_03229at 3367.023 kb on + strand, within ECD_03229at 3367.024 kb on - strand, within ECD_03229at 3367.024 kb on - strand, within ECD_03229at 3367.177 kb on + strand, within ECD_03229at 3367.203 kb on - strand, within ECD_03229at 3367.316 kb on + strand, within ECD_03229at 3367.317 kb on - strand, within ECD_03229at 3367.317 kb on - strand, within ECD_03229at 3367.334 kb on + strand, within ECD_03229at 3367.334 kb on + strand, within ECD_03229at 3367.334 kb on + strand, within ECD_03229at 3367.335 kb on - strand, within ECD_03229at 3367.335 kb on - strand, within ECD_03229at 3367.335 kb on - strand, within ECD_03229at 3367.335 kb on - strand, within ECD_03229at 3367.337 kb on + strand, within ECD_03229at 3367.337 kb on + strand, within ECD_03229at 3367.337 kb on + strand, within ECD_03229at 3367.337 kb on + strand, within ECD_03229at 3367.337 kb on + strand, within ECD_03229at 3367.337 kb on + strand, within ECD_03229at 3367.338 kb on - strand, within ECD_03229at 3367.338 kb on - strand, within ECD_03229at 3367.387 kb on + strand, within ECD_03229at 3367.387 kb on + strand, within ECD_03229at 3367.388 kb on - strand, within ECD_03229at 3367.511 kb on - strand, within ECD_03229at 3367.585 kb on + strandat 3367.586 kb on - strandat 3367.586 kb on - strandat 3367.586 kb on - strandat 3367.587 kb on + strandat 3367.587 kb on + strandat 3367.588 kb on - strandat 3367.704 kb on + strandat 3367.704 kb on + strandat 3367.705 kb on - strandat 3367.705 kb on - strandat 3367.705 kb on - strandat 3367.705 kb on - strandat 3367.705 kb on - strandat 3367.839 kb on + strand, within ECD_03230at 3367.874 kb on + strand, within ECD_03230at 3367.874 kb on + strand, within ECD_03230at 3367.875 kb on - strand, within ECD_03230at 3367.875 kb on - strand, within ECD_03230at 3367.880 kb on - strand, within ECD_03230at 3367.923 kb on + strand, within ECD_03230at 3367.937 kb on + strand, within ECD_03230at 3367.937 kb on + strand, within ECD_03230at 3367.941 kb on - strand, within ECD_03230at 3368.054 kb on - strandat 3368.120 kb on + strandat 3368.120 kb on + strandat 3368.173 kb on + strandat 3368.186 kb on + strand, within ECD_03231at 3368.190 kb on + strand, within ECD_03231at 3368.191 kb on - strand, within ECD_03231at 3368.202 kb on + strand, within ECD_03231at 3368.240 kb on - strand, within ECD_03231at 3368.240 kb on - strand, within ECD_03231at 3368.240 kb on - strand, within ECD_03231at 3368.303 kb on - strand, within ECD_03231at 3368.319 kb on + strand, within ECD_03231at 3368.322 kb on + strand, within ECD_03231at 3368.322 kb on + strand, within ECD_03231at 3368.323 kb on - strand, within ECD_03231at 3368.323 kb on - strand, within ECD_03231at 3368.356 kb on - strand, within ECD_03231at 3368.453 kb on + strand, within ECD_03231at 3368.454 kb on - strand, within ECD_03231at 3368.454 kb on - strand, within ECD_03231at 3368.494 kb on + strand, within ECD_03231at 3368.545 kb on + strand, within ECD_03231at 3368.546 kb on - strand, within ECD_03231at 3368.546 kb on - strand, within ECD_03231at 3368.549 kb on + strand, within ECD_03231at 3368.549 kb on + strand, within ECD_03231at 3368.549 kb on + strand, within ECD_03231at 3368.550 kb on - strand, within ECD_03231at 3368.550 kb on - strand, within ECD_03231at 3368.550 kb on - strand, within ECD_03231

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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3,365,895 + -0.3
3,365,895 + -0.1
3,365,947 + -0.5
3,365,947 + -0.9
3,365,947 + +0.3
3,365,947 + -0.4
3,365,947 + -0.9
3,365,948 - -1.2
3,365,948 - -0.1
3,366,051 - +0.5
3,366,053 + +0.4
3,366,279 + +0.3
3,366,279 + +0.6
3,366,280 - -0.3
3,366,280 - +0.4
3,366,280 - -0.3
3,366,294 - +1.7
3,366,365 + -0.7
3,366,398 + -0.5
3,366,398 + +0.5
3,366,399 - +0.1
3,366,399 - +0.6
3,366,412 - -0.2
3,366,470 + +0.3
3,366,532 - +1.4
3,366,560 - ECD_03229 0.11 -0.5
3,366,623 - ECD_03229 0.16 -0.8
3,366,623 - ECD_03229 0.16 -0.7
3,366,721 + ECD_03229 0.24 -0.4
3,366,769 - ECD_03229 0.28 +0.9
3,366,791 - ECD_03229 0.29 -0.3
3,366,807 + ECD_03229 0.30 -0.2
3,366,808 - ECD_03229 0.30 -0.2
3,366,931 - ECD_03229 0.40 -0.6
3,367,023 + ECD_03229 0.47 -0.5
3,367,024 - ECD_03229 0.47 -0.4
3,367,024 - ECD_03229 0.47 -0.6
3,367,177 + ECD_03229 0.59 +0.0
3,367,203 - ECD_03229 0.61 +2.2
3,367,316 + ECD_03229 0.69 -1.3
3,367,317 - ECD_03229 0.70 +0.1
3,367,317 - ECD_03229 0.70 +0.2
3,367,334 + ECD_03229 0.71 -0.3
3,367,334 + ECD_03229 0.71 -0.3
3,367,334 + ECD_03229 0.71 +0.3
3,367,335 - ECD_03229 0.71 +1.0
3,367,335 - ECD_03229 0.71 -0.2
3,367,335 - ECD_03229 0.71 +0.4
3,367,335 - ECD_03229 0.71 -0.2
3,367,337 + ECD_03229 0.71 -0.1
3,367,337 + ECD_03229 0.71 -0.9
3,367,337 + ECD_03229 0.71 +0.5
3,367,337 + ECD_03229 0.71 +0.9
3,367,337 + ECD_03229 0.71 -0.7
3,367,337 + ECD_03229 0.71 +0.1
3,367,338 - ECD_03229 0.71 +0.1
3,367,338 - ECD_03229 0.71 -0.6
3,367,387 + ECD_03229 0.75 +0.3
3,367,387 + ECD_03229 0.75 +0.2
3,367,388 - ECD_03229 0.75 +0.6
3,367,511 - ECD_03229 0.84 -0.3
3,367,585 + +1.3
3,367,586 - +0.4
3,367,586 - -0.1
3,367,586 - +0.0
3,367,587 + +0.7
3,367,587 + +0.0
3,367,588 - -0.1
3,367,704 + +0.3
3,367,704 + -1.4
3,367,705 - -0.3
3,367,705 - -1.0
3,367,705 - +0.3
3,367,705 - +0.0
3,367,705 - -0.8
3,367,839 + ECD_03230 0.32 +0.4
3,367,874 + ECD_03230 0.42 +1.4
3,367,874 + ECD_03230 0.42 -0.9
3,367,875 - ECD_03230 0.42 -1.1
3,367,875 - ECD_03230 0.42 +0.3
3,367,880 - ECD_03230 0.44 -1.2
3,367,923 + ECD_03230 0.56 +0.2
3,367,937 + ECD_03230 0.60 +0.6
3,367,937 + ECD_03230 0.60 -0.0
3,367,941 - ECD_03230 0.61 -0.4
3,368,054 - +0.2
3,368,120 + +0.3
3,368,120 + +0.8
3,368,173 + +0.1
3,368,186 + ECD_03231 0.11 +0.9
3,368,190 + ECD_03231 0.11 -0.5
3,368,191 - ECD_03231 0.11 -0.4
3,368,202 + ECD_03231 0.13 -0.4
3,368,240 - ECD_03231 0.17 +0.1
3,368,240 - ECD_03231 0.17 +0.7
3,368,240 - ECD_03231 0.17 +0.5
3,368,303 - ECD_03231 0.24 -0.2
3,368,319 + ECD_03231 0.26 -0.3
3,368,322 + ECD_03231 0.26 +0.3
3,368,322 + ECD_03231 0.26 +1.3
3,368,323 - ECD_03231 0.27 -0.5
3,368,323 - ECD_03231 0.27 +0.4
3,368,356 - ECD_03231 0.30 +0.5
3,368,453 + ECD_03231 0.41 +0.5
3,368,454 - ECD_03231 0.41 -0.2
3,368,454 - ECD_03231 0.41 -1.2
3,368,494 + ECD_03231 0.46 +0.7
3,368,545 + ECD_03231 0.52 +0.4
3,368,546 - ECD_03231 0.52 -0.2
3,368,546 - ECD_03231 0.52 -1.0
3,368,549 + ECD_03231 0.52 +0.6
3,368,549 + ECD_03231 0.52 -0.2
3,368,549 + ECD_03231 0.52 +1.2
3,368,550 - ECD_03231 0.52 +0.3
3,368,550 - ECD_03231 0.52 +0.4
3,368,550 - ECD_03231 0.52 +0.1

Or see this region's nucleotide sequence