Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03227 and ECD_03228 overlap by 82 nucleotides ECD_03228 and ECD_03229 are separated by 539 nucleotides ECD_03229 and ECD_03230 are separated by 11 nucleotides ECD_03230 and ECD_03231 are separated by 10 nucleotides
ECD_03227: ECD_03227 - IS1 protein InsB, at 3,365,173 to 3,365,676
_03227
ECD_03228: ECD_03228 - IS1 protein InsA, at 3,365,595 to 3,365,870
_03228
ECD_03229: ECD_03229 - inner membrane protein, at 3,366,410 to 3,367,714
_03229
ECD_03230: ECD_03230 - DUF2620 family protein, at 3,367,726 to 3,368,079
_03230
ECD_03231: ECD_03231 - phosphotriesterase homology protein, at 3,368,090 to 3,368,968
_03231
Position (kb)
3366
3367
3368 Strain fitness (log2 ratio)
-1
0
1
2 at 3365.895 kb on + strand at 3365.895 kb on + strand at 3365.947 kb on + strand at 3365.947 kb on + strand at 3365.947 kb on + strand at 3365.947 kb on + strand at 3365.947 kb on + strand at 3365.948 kb on - strand at 3365.948 kb on - strand at 3366.051 kb on - strand at 3366.053 kb on + strand at 3366.279 kb on + strand at 3366.279 kb on + strand at 3366.280 kb on - strand at 3366.280 kb on - strand at 3366.280 kb on - strand at 3366.294 kb on - strand at 3366.365 kb on + strand at 3366.398 kb on + strand at 3366.398 kb on + strand at 3366.399 kb on - strand at 3366.399 kb on - strand at 3366.412 kb on - strand at 3366.470 kb on + strand at 3366.532 kb on - strand at 3366.560 kb on - strand, within ECD_03229 at 3366.623 kb on - strand, within ECD_03229 at 3366.623 kb on - strand, within ECD_03229 at 3366.721 kb on + strand, within ECD_03229 at 3366.769 kb on - strand, within ECD_03229 at 3366.791 kb on - strand, within ECD_03229 at 3366.807 kb on + strand, within ECD_03229 at 3366.808 kb on - strand, within ECD_03229 at 3366.931 kb on - strand, within ECD_03229 at 3367.023 kb on + strand, within ECD_03229 at 3367.024 kb on - strand, within ECD_03229 at 3367.024 kb on - strand, within ECD_03229 at 3367.177 kb on + strand, within ECD_03229 at 3367.203 kb on - strand, within ECD_03229 at 3367.316 kb on + strand, within ECD_03229 at 3367.317 kb on - strand, within ECD_03229 at 3367.317 kb on - strand, within ECD_03229 at 3367.334 kb on + strand, within ECD_03229 at 3367.334 kb on + strand, within ECD_03229 at 3367.334 kb on + strand, within ECD_03229 at 3367.335 kb on - strand, within ECD_03229 at 3367.335 kb on - strand, within ECD_03229 at 3367.335 kb on - strand, within ECD_03229 at 3367.335 kb on - strand, within ECD_03229 at 3367.337 kb on + strand, within ECD_03229 at 3367.337 kb on + strand, within ECD_03229 at 3367.337 kb on + strand, within ECD_03229 at 3367.337 kb on + strand, within ECD_03229 at 3367.337 kb on + strand, within ECD_03229 at 3367.337 kb on + strand, within ECD_03229 at 3367.338 kb on - strand, within ECD_03229 at 3367.338 kb on - strand, within ECD_03229 at 3367.387 kb on + strand, within ECD_03229 at 3367.387 kb on + strand, within ECD_03229 at 3367.388 kb on - strand, within ECD_03229 at 3367.511 kb on - strand, within ECD_03229 at 3367.585 kb on + strand at 3367.586 kb on - strand at 3367.586 kb on - strand at 3367.586 kb on - strand at 3367.587 kb on + strand at 3367.587 kb on + strand at 3367.588 kb on - strand at 3367.704 kb on + strand at 3367.704 kb on + strand at 3367.705 kb on - strand at 3367.705 kb on - strand at 3367.705 kb on - strand at 3367.705 kb on - strand at 3367.705 kb on - strand at 3367.839 kb on + strand, within ECD_03230 at 3367.874 kb on + strand, within ECD_03230 at 3367.874 kb on + strand, within ECD_03230 at 3367.875 kb on - strand, within ECD_03230 at 3367.875 kb on - strand, within ECD_03230 at 3367.880 kb on - strand, within ECD_03230 at 3367.923 kb on + strand, within ECD_03230 at 3367.937 kb on + strand, within ECD_03230 at 3367.937 kb on + strand, within ECD_03230 at 3367.941 kb on - strand, within ECD_03230 at 3368.054 kb on - strand at 3368.120 kb on + strand at 3368.120 kb on + strand at 3368.173 kb on + strand at 3368.186 kb on + strand, within ECD_03231 at 3368.190 kb on + strand, within ECD_03231 at 3368.191 kb on - strand, within ECD_03231 at 3368.202 kb on + strand, within ECD_03231 at 3368.240 kb on - strand, within ECD_03231 at 3368.240 kb on - strand, within ECD_03231 at 3368.240 kb on - strand, within ECD_03231 at 3368.303 kb on - strand, within ECD_03231 at 3368.319 kb on + strand, within ECD_03231 at 3368.322 kb on + strand, within ECD_03231 at 3368.322 kb on + strand, within ECD_03231 at 3368.323 kb on - strand, within ECD_03231 at 3368.323 kb on - strand, within ECD_03231 at 3368.356 kb on - strand, within ECD_03231 at 3368.453 kb on + strand, within ECD_03231 at 3368.454 kb on - strand, within ECD_03231 at 3368.454 kb on - strand, within ECD_03231 at 3368.494 kb on + strand, within ECD_03231 at 3368.545 kb on + strand, within ECD_03231 at 3368.546 kb on - strand, within ECD_03231 at 3368.546 kb on - strand, within ECD_03231 at 3368.549 kb on + strand, within ECD_03231 at 3368.549 kb on + strand, within ECD_03231 at 3368.549 kb on + strand, within ECD_03231 at 3368.550 kb on - strand, within ECD_03231 at 3368.550 kb on - strand, within ECD_03231 at 3368.550 kb on - strand, within ECD_03231
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 3,365,895 + -0.3 3,365,895 + -0.1 3,365,947 + -0.5 3,365,947 + -0.9 3,365,947 + +0.3 3,365,947 + -0.4 3,365,947 + -0.9 3,365,948 - -1.2 3,365,948 - -0.1 3,366,051 - +0.5 3,366,053 + +0.4 3,366,279 + +0.3 3,366,279 + +0.6 3,366,280 - -0.3 3,366,280 - +0.4 3,366,280 - -0.3 3,366,294 - +1.7 3,366,365 + -0.7 3,366,398 + -0.5 3,366,398 + +0.5 3,366,399 - +0.1 3,366,399 - +0.6 3,366,412 - -0.2 3,366,470 + +0.3 3,366,532 - +1.4 3,366,560 - ECD_03229 0.11 -0.5 3,366,623 - ECD_03229 0.16 -0.8 3,366,623 - ECD_03229 0.16 -0.7 3,366,721 + ECD_03229 0.24 -0.4 3,366,769 - ECD_03229 0.28 +0.9 3,366,791 - ECD_03229 0.29 -0.3 3,366,807 + ECD_03229 0.30 -0.2 3,366,808 - ECD_03229 0.30 -0.2 3,366,931 - ECD_03229 0.40 -0.6 3,367,023 + ECD_03229 0.47 -0.5 3,367,024 - ECD_03229 0.47 -0.4 3,367,024 - ECD_03229 0.47 -0.6 3,367,177 + ECD_03229 0.59 +0.0 3,367,203 - ECD_03229 0.61 +2.2 3,367,316 + ECD_03229 0.69 -1.3 3,367,317 - ECD_03229 0.70 +0.1 3,367,317 - ECD_03229 0.70 +0.2 3,367,334 + ECD_03229 0.71 -0.3 3,367,334 + ECD_03229 0.71 -0.3 3,367,334 + ECD_03229 0.71 +0.3 3,367,335 - ECD_03229 0.71 +1.0 3,367,335 - ECD_03229 0.71 -0.2 3,367,335 - ECD_03229 0.71 +0.4 3,367,335 - ECD_03229 0.71 -0.2 3,367,337 + ECD_03229 0.71 -0.1 3,367,337 + ECD_03229 0.71 -0.9 3,367,337 + ECD_03229 0.71 +0.5 3,367,337 + ECD_03229 0.71 +0.9 3,367,337 + ECD_03229 0.71 -0.7 3,367,337 + ECD_03229 0.71 +0.1 3,367,338 - ECD_03229 0.71 +0.1 3,367,338 - ECD_03229 0.71 -0.6 3,367,387 + ECD_03229 0.75 +0.3 3,367,387 + ECD_03229 0.75 +0.2 3,367,388 - ECD_03229 0.75 +0.6 3,367,511 - ECD_03229 0.84 -0.3 3,367,585 + +1.3 3,367,586 - +0.4 3,367,586 - -0.1 3,367,586 - +0.0 3,367,587 + +0.7 3,367,587 + +0.0 3,367,588 - -0.1 3,367,704 + +0.3 3,367,704 + -1.4 3,367,705 - -0.3 3,367,705 - -1.0 3,367,705 - +0.3 3,367,705 - +0.0 3,367,705 - -0.8 3,367,839 + ECD_03230 0.32 +0.4 3,367,874 + ECD_03230 0.42 +1.4 3,367,874 + ECD_03230 0.42 -0.9 3,367,875 - ECD_03230 0.42 -1.1 3,367,875 - ECD_03230 0.42 +0.3 3,367,880 - ECD_03230 0.44 -1.2 3,367,923 + ECD_03230 0.56 +0.2 3,367,937 + ECD_03230 0.60 +0.6 3,367,937 + ECD_03230 0.60 -0.0 3,367,941 - ECD_03230 0.61 -0.4 3,368,054 - +0.2 3,368,120 + +0.3 3,368,120 + +0.8 3,368,173 + +0.1 3,368,186 + ECD_03231 0.11 +0.9 3,368,190 + ECD_03231 0.11 -0.5 3,368,191 - ECD_03231 0.11 -0.4 3,368,202 + ECD_03231 0.13 -0.4 3,368,240 - ECD_03231 0.17 +0.1 3,368,240 - ECD_03231 0.17 +0.7 3,368,240 - ECD_03231 0.17 +0.5 3,368,303 - ECD_03231 0.24 -0.2 3,368,319 + ECD_03231 0.26 -0.3 3,368,322 + ECD_03231 0.26 +0.3 3,368,322 + ECD_03231 0.26 +1.3 3,368,323 - ECD_03231 0.27 -0.5 3,368,323 - ECD_03231 0.27 +0.4 3,368,356 - ECD_03231 0.30 +0.5 3,368,453 + ECD_03231 0.41 +0.5 3,368,454 - ECD_03231 0.41 -0.2 3,368,454 - ECD_03231 0.41 -1.2 3,368,494 + ECD_03231 0.46 +0.7 3,368,545 + ECD_03231 0.52 +0.4 3,368,546 - ECD_03231 0.52 -0.2 3,368,546 - ECD_03231 0.52 -1.0 3,368,549 + ECD_03231 0.52 +0.6 3,368,549 + ECD_03231 0.52 -0.2 3,368,549 + ECD_03231 0.52 +1.2 3,368,550 - ECD_03231 0.52 +0.3 3,368,550 - ECD_03231 0.52 +0.4 3,368,550 - ECD_03231 0.52 +0.1
Or see this region's nucleotide sequence