Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03209 and ECD_03210 are separated by 66 nucleotides ECD_03210 and ECD_03211 are separated by 85 nucleotides ECD_03211 and ECD_03212 are separated by 31 nucleotides
ECD_03209: ECD_03209 - putative transporter, FUSC superfamily inner membrane protein, at 3,346,392 to 3,348,494
_03209
ECD_03210: ECD_03210 - bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase, at 3,348,561 to 3,349,781
_03210
ECD_03211: ECD_03211 - aminodeoxychorismate synthase, subunit II, at 3,349,867 to 3,350,430
_03211
ECD_03212: ECD_03212 - stationary phase-induced protein, putative toxin, at 3,350,462 to 3,351,064
_03212
Position (kb)
3348
3349
3350 Strain fitness (log2 ratio)
-1
0
1
2 at 3347.590 kb on + strand, within ECD_03209 at 3347.713 kb on - strand, within ECD_03209 at 3347.713 kb on - strand, within ECD_03209 at 3347.799 kb on - strand, within ECD_03209 at 3347.799 kb on - strand, within ECD_03209 at 3347.811 kb on + strand, within ECD_03209 at 3347.811 kb on + strand, within ECD_03209 at 3347.811 kb on + strand, within ECD_03209 at 3347.811 kb on + strand, within ECD_03209 at 3347.812 kb on - strand, within ECD_03209 at 3347.812 kb on - strand, within ECD_03209 at 3347.812 kb on - strand, within ECD_03209 at 3347.812 kb on - strand, within ECD_03209 at 3347.814 kb on - strand, within ECD_03209 at 3347.824 kb on + strand, within ECD_03209 at 3347.825 kb on - strand, within ECD_03209 at 3347.825 kb on - strand, within ECD_03209 at 3347.847 kb on + strand, within ECD_03209 at 3347.847 kb on + strand, within ECD_03209 at 3347.847 kb on + strand, within ECD_03209 at 3347.847 kb on + strand, within ECD_03209 at 3347.848 kb on - strand, within ECD_03209 at 3347.848 kb on - strand, within ECD_03209 at 3347.848 kb on - strand, within ECD_03209 at 3347.887 kb on + strand, within ECD_03209 at 3347.887 kb on + strand, within ECD_03209 at 3347.974 kb on - strand, within ECD_03209 at 3348.017 kb on + strand, within ECD_03209 at 3348.018 kb on - strand, within ECD_03209 at 3348.059 kb on + strand, within ECD_03209 at 3348.059 kb on + strand, within ECD_03209 at 3348.059 kb on + strand, within ECD_03209 at 3348.060 kb on - strand, within ECD_03209 at 3348.060 kb on - strand, within ECD_03209 at 3348.060 kb on - strand, within ECD_03209 at 3348.069 kb on + strand, within ECD_03209 at 3348.069 kb on + strand, within ECD_03209 at 3348.072 kb on - strand, within ECD_03209 at 3348.072 kb on - strand, within ECD_03209 at 3348.118 kb on - strand, within ECD_03209 at 3348.128 kb on + strand, within ECD_03209 at 3348.170 kb on + strand, within ECD_03209 at 3348.170 kb on + strand, within ECD_03209 at 3348.170 kb on + strand, within ECD_03209 at 3348.170 kb on + strand, within ECD_03209 at 3348.171 kb on - strand, within ECD_03209 at 3348.171 kb on - strand, within ECD_03209 at 3348.171 kb on - strand, within ECD_03209 at 3348.173 kb on + strand, within ECD_03209 at 3348.174 kb on - strand, within ECD_03209 at 3348.234 kb on + strand, within ECD_03209 at 3348.234 kb on + strand, within ECD_03209 at 3348.235 kb on - strand, within ECD_03209 at 3348.239 kb on - strand, within ECD_03209 at 3348.362 kb on + strand at 3348.379 kb on + strand at 3348.380 kb on - strand at 3348.493 kb on - strand at 3348.493 kb on - strand at 3348.502 kb on + strand at 3348.558 kb on + strand at 3348.559 kb on - strand at 3348.685 kb on - strand, within ECD_03210 at 3348.706 kb on + strand, within ECD_03210 at 3348.734 kb on - strand, within ECD_03210 at 3348.734 kb on - strand, within ECD_03210 at 3348.786 kb on - strand, within ECD_03210 at 3348.789 kb on + strand, within ECD_03210 at 3348.789 kb on + strand, within ECD_03210 at 3348.790 kb on - strand, within ECD_03210 at 3348.797 kb on - strand, within ECD_03210 at 3348.920 kb on + strand, within ECD_03210 at 3349.060 kb on + strand, within ECD_03210 at 3349.060 kb on + strand, within ECD_03210 at 3349.061 kb on - strand, within ECD_03210 at 3349.061 kb on - strand, within ECD_03210 at 3349.061 kb on - strand, within ECD_03210 at 3349.061 kb on - strand, within ECD_03210 at 3349.061 kb on - strand, within ECD_03210 at 3349.380 kb on - strand, within ECD_03210 at 3349.400 kb on + strand, within ECD_03210 at 3349.400 kb on + strand, within ECD_03210 at 3349.401 kb on - strand, within ECD_03210 at 3349.434 kb on - strand, within ECD_03210 at 3349.449 kb on - strand, within ECD_03210 at 3349.470 kb on - strand, within ECD_03210 at 3349.554 kb on - strand, within ECD_03210 at 3349.651 kb on + strand, within ECD_03210 at 3349.652 kb on - strand, within ECD_03210 at 3349.652 kb on - strand, within ECD_03210 at 3349.703 kb on + strand at 3349.704 kb on - strand at 3349.721 kb on - strand at 3349.721 kb on - strand at 3349.798 kb on + strand at 3349.798 kb on + strand at 3349.799 kb on - strand at 3349.799 kb on - strand at 3349.799 kb on - strand at 3349.799 kb on - strand at 3349.821 kb on - strand at 3349.834 kb on - strand at 3349.917 kb on + strand at 3350.021 kb on - strand, within ECD_03211 at 3350.052 kb on - strand, within ECD_03211 at 3350.064 kb on + strand, within ECD_03211 at 3350.103 kb on + strand, within ECD_03211 at 3350.103 kb on + strand, within ECD_03211 at 3350.268 kb on + strand, within ECD_03211 at 3350.269 kb on - strand, within ECD_03211 at 3350.269 kb on - strand, within ECD_03211 at 3350.409 kb on - strand at 3350.409 kb on - strand at 3350.409 kb on - strand at 3350.409 kb on - strand at 3350.412 kb on + strand at 3350.413 kb on - strand at 3350.413 kb on - strand at 3350.413 kb on - strand at 3350.416 kb on + strand at 3350.416 kb on + strand at 3350.416 kb on + strand at 3350.417 kb on - strand at 3350.417 kb on - strand at 3350.417 kb on - strand at 3350.418 kb on + strand at 3350.418 kb on + strand at 3350.419 kb on - strand at 3350.459 kb on - strand at 3350.463 kb on + strand at 3350.498 kb on - strand at 3350.498 kb on - strand at 3350.501 kb on + strand at 3350.502 kb on - strand at 3350.683 kb on - strand, within ECD_03212 at 3350.685 kb on + strand, within ECD_03212
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 3,347,590 + ECD_03209 0.57 -1.1 3,347,713 - ECD_03209 0.63 +0.3 3,347,713 - ECD_03209 0.63 -0.1 3,347,799 - ECD_03209 0.67 +0.3 3,347,799 - ECD_03209 0.67 -0.6 3,347,811 + ECD_03209 0.67 +0.2 3,347,811 + ECD_03209 0.67 -0.5 3,347,811 + ECD_03209 0.67 +0.6 3,347,811 + ECD_03209 0.67 +0.5 3,347,812 - ECD_03209 0.68 +0.7 3,347,812 - ECD_03209 0.68 +0.3 3,347,812 - ECD_03209 0.68 +0.9 3,347,812 - ECD_03209 0.68 +0.7 3,347,814 - ECD_03209 0.68 +0.2 3,347,824 + ECD_03209 0.68 +0.1 3,347,825 - ECD_03209 0.68 +0.1 3,347,825 - ECD_03209 0.68 -0.5 3,347,847 + ECD_03209 0.69 +0.5 3,347,847 + ECD_03209 0.69 -0.4 3,347,847 + ECD_03209 0.69 +0.2 3,347,847 + ECD_03209 0.69 +1.8 3,347,848 - ECD_03209 0.69 +0.4 3,347,848 - ECD_03209 0.69 -0.6 3,347,848 - ECD_03209 0.69 +0.1 3,347,887 + ECD_03209 0.71 -0.4 3,347,887 + ECD_03209 0.71 +1.9 3,347,974 - ECD_03209 0.75 +1.1 3,348,017 + ECD_03209 0.77 +0.7 3,348,018 - ECD_03209 0.77 +0.2 3,348,059 + ECD_03209 0.79 -0.5 3,348,059 + ECD_03209 0.79 +0.1 3,348,059 + ECD_03209 0.79 +0.1 3,348,060 - ECD_03209 0.79 -0.3 3,348,060 - ECD_03209 0.79 +1.1 3,348,060 - ECD_03209 0.79 -0.6 3,348,069 + ECD_03209 0.80 +0.6 3,348,069 + ECD_03209 0.80 -0.6 3,348,072 - ECD_03209 0.80 +0.6 3,348,072 - ECD_03209 0.80 -0.2 3,348,118 - ECD_03209 0.82 -0.1 3,348,128 + ECD_03209 0.83 +0.9 3,348,170 + ECD_03209 0.85 +0.5 3,348,170 + ECD_03209 0.85 -0.0 3,348,170 + ECD_03209 0.85 +0.2 3,348,170 + ECD_03209 0.85 -1.0 3,348,171 - ECD_03209 0.85 -0.8 3,348,171 - ECD_03209 0.85 +0.3 3,348,171 - ECD_03209 0.85 +0.2 3,348,173 + ECD_03209 0.85 -0.5 3,348,174 - ECD_03209 0.85 -0.5 3,348,234 + ECD_03209 0.88 -0.1 3,348,234 + ECD_03209 0.88 +0.4 3,348,235 - ECD_03209 0.88 -0.8 3,348,239 - ECD_03209 0.88 +0.6 3,348,362 + -0.2 3,348,379 + -0.5 3,348,380 - +0.1 3,348,493 - +0.5 3,348,493 - +0.1 3,348,502 + -1.2 3,348,558 + -0.2 3,348,559 - +1.1 3,348,685 - ECD_03210 0.10 -0.4 3,348,706 + ECD_03210 0.12 -0.7 3,348,734 - ECD_03210 0.14 +0.6 3,348,734 - ECD_03210 0.14 +0.2 3,348,786 - ECD_03210 0.18 +0.1 3,348,789 + ECD_03210 0.19 -0.6 3,348,789 + ECD_03210 0.19 -0.9 3,348,790 - ECD_03210 0.19 -1.4 3,348,797 - ECD_03210 0.19 +0.6 3,348,920 + ECD_03210 0.29 -0.1 3,349,060 + ECD_03210 0.41 -0.4 3,349,060 + ECD_03210 0.41 -1.2 3,349,061 - ECD_03210 0.41 +1.1 3,349,061 - ECD_03210 0.41 -0.4 3,349,061 - ECD_03210 0.41 +0.1 3,349,061 - ECD_03210 0.41 +0.0 3,349,061 - ECD_03210 0.41 +0.1 3,349,380 - ECD_03210 0.67 -0.1 3,349,400 + ECD_03210 0.69 +0.4 3,349,400 + ECD_03210 0.69 +0.1 3,349,401 - ECD_03210 0.69 -0.2 3,349,434 - ECD_03210 0.71 +0.5 3,349,449 - ECD_03210 0.73 +0.2 3,349,470 - ECD_03210 0.74 -0.4 3,349,554 - ECD_03210 0.81 -0.3 3,349,651 + ECD_03210 0.89 -0.4 3,349,652 - ECD_03210 0.89 -0.1 3,349,652 - ECD_03210 0.89 +0.4 3,349,703 + +0.1 3,349,704 - +0.1 3,349,721 - +0.5 3,349,721 - +0.2 3,349,798 + -0.4 3,349,798 + +0.0 3,349,799 - -0.0 3,349,799 - -0.0 3,349,799 - +0.7 3,349,799 - +0.4 3,349,821 - +0.1 3,349,834 - -1.1 3,349,917 + +1.2 3,350,021 - ECD_03211 0.27 +0.4 3,350,052 - ECD_03211 0.33 +1.1 3,350,064 + ECD_03211 0.35 +1.5 3,350,103 + ECD_03211 0.42 -0.2 3,350,103 + ECD_03211 0.42 +0.9 3,350,268 + ECD_03211 0.71 -0.2 3,350,269 - ECD_03211 0.71 +0.7 3,350,269 - ECD_03211 0.71 +0.6 3,350,409 - +0.1 3,350,409 - -0.0 3,350,409 - +0.9 3,350,409 - -0.3 3,350,412 + +0.2 3,350,413 - -0.5 3,350,413 - +0.6 3,350,413 - +0.2 3,350,416 + +0.4 3,350,416 + +0.0 3,350,416 + +0.1 3,350,417 - +0.1 3,350,417 - +0.9 3,350,417 - -0.4 3,350,418 + +0.3 3,350,418 + -0.1 3,350,419 - +1.1 3,350,459 - -0.4 3,350,463 + +0.5 3,350,498 - +0.4 3,350,498 - -0.4 3,350,501 + +1.0 3,350,502 - +0.9 3,350,683 - ECD_03212 0.37 +0.3 3,350,685 + ECD_03212 0.37 -0.6
Or see this region's nucleotide sequence