Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02504 and ECD_02505 are separated by 148 nucleotides ECD_02505 and ECD_02506 are separated by 61 nucleotides ECD_02506 and ECD_02507 overlap by 11 nucleotides ECD_02507 and ECD_02508 are separated by 131 nucleotides
ECD_02504: ECD_02504 - recombination and repair protein, at 2,618,197 to 2,619,858
_02504
ECD_02505: ECD_02505 - lipoprotein component of BamABCDE OM biogenesis complex, at 2,620,007 to 2,620,348
_02505
ECD_02506: ECD_02506 - UPF0125 family protein, at 2,620,410 to 2,620,700
_02506
ECD_02507: ECD_02507 - toxic UPF0083 family protein inhibitor of 70S ribosome formation, at 2,620,690 to 2,621,166
_02507
ECD_02508: ECD_02508 - tmRNA-binding trans-translation protein, at 2,621,298 to 2,621,780
_02508
Position (kb)
2620
2621
2622 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2619.703 kb on + strand at 2619.704 kb on - strand at 2619.704 kb on - strand at 2619.819 kb on + strand at 2619.819 kb on + strand at 2619.819 kb on + strand at 2619.820 kb on - strand at 2619.820 kb on - strand at 2619.820 kb on - strand at 2619.820 kb on - strand at 2619.820 kb on - strand at 2619.820 kb on - strand at 2619.820 kb on - strand at 2619.823 kb on - strand at 2619.823 kb on - strand at 2619.885 kb on + strand at 2619.886 kb on - strand at 2619.925 kb on + strand at 2619.942 kb on + strand at 2619.942 kb on + strand at 2619.942 kb on + strand at 2619.942 kb on + strand at 2619.942 kb on + strand at 2619.942 kb on + strand at 2619.942 kb on + strand at 2619.943 kb on - strand at 2619.945 kb on + strand at 2619.945 kb on + strand at 2619.945 kb on + strand at 2619.946 kb on - strand at 2619.946 kb on - strand at 2619.946 kb on - strand at 2619.956 kb on + strand at 2619.956 kb on + strand at 2619.956 kb on + strand at 2619.956 kb on + strand at 2619.956 kb on + strand at 2619.956 kb on + strand at 2619.956 kb on + strand at 2619.956 kb on + strand at 2619.956 kb on + strand at 2619.959 kb on + strand at 2619.959 kb on + strand at 2619.959 kb on + strand at 2619.960 kb on - strand at 2619.974 kb on + strand at 2619.974 kb on + strand at 2619.974 kb on + strand at 2619.974 kb on + strand at 2619.974 kb on + strand at 2619.974 kb on + strand at 2619.974 kb on + strand at 2619.974 kb on + strand at 2620.006 kb on + strand at 2620.007 kb on - strand at 2620.015 kb on + strand at 2620.015 kb on + strand at 2620.041 kb on + strand at 2620.041 kb on + strand at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.044 kb on + strand, within ECD_02505 at 2620.045 kb on - strand, within ECD_02505 at 2620.115 kb on + strand, within ECD_02505 at 2620.115 kb on + strand, within ECD_02505 at 2620.115 kb on + strand, within ECD_02505 at 2620.115 kb on + strand, within ECD_02505 at 2620.116 kb on - strand, within ECD_02505 at 2620.116 kb on - strand, within ECD_02505 at 2620.134 kb on + strand, within ECD_02505 at 2620.143 kb on + strand, within ECD_02505 at 2620.143 kb on + strand, within ECD_02505 at 2620.143 kb on + strand, within ECD_02505 at 2620.143 kb on + strand, within ECD_02505 at 2620.143 kb on + strand, within ECD_02505 at 2620.143 kb on + strand, within ECD_02505 at 2620.144 kb on - strand, within ECD_02505 at 2620.176 kb on - strand, within ECD_02505 at 2620.186 kb on + strand, within ECD_02505 at 2620.214 kb on - strand, within ECD_02505 at 2620.219 kb on + strand, within ECD_02505 at 2620.219 kb on + strand, within ECD_02505 at 2620.219 kb on + strand, within ECD_02505 at 2620.220 kb on - strand, within ECD_02505 at 2620.220 kb on - strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.229 kb on + strand, within ECD_02505 at 2620.230 kb on - strand, within ECD_02505 at 2620.230 kb on - strand, within ECD_02505 at 2620.230 kb on - strand, within ECD_02505 at 2620.230 kb on - strand, within ECD_02505 at 2620.230 kb on - strand, within ECD_02505 at 2620.263 kb on + strand, within ECD_02505 at 2620.263 kb on + strand, within ECD_02505 at 2620.263 kb on + strand, within ECD_02505 at 2620.263 kb on + strand, within ECD_02505 at 2620.263 kb on + strand, within ECD_02505 at 2620.263 kb on + strand, within ECD_02505 at 2620.263 kb on + strand, within ECD_02505 at 2620.263 kb on + strand, within ECD_02505 at 2620.316 kb on - strand at 2620.322 kb on - strand at 2620.342 kb on + strand at 2620.346 kb on + strand at 2620.346 kb on + strand at 2620.346 kb on + strand at 2620.346 kb on + strand at 2620.347 kb on - strand at 2620.347 kb on - strand at 2620.349 kb on + strand at 2620.352 kb on + strand at 2620.415 kb on + strand at 2620.416 kb on - strand at 2620.416 kb on - strand at 2620.478 kb on - strand, within ECD_02506 at 2620.478 kb on - strand, within ECD_02506 at 2620.516 kb on - strand, within ECD_02506 at 2620.535 kb on - strand, within ECD_02506 at 2620.535 kb on - strand, within ECD_02506 at 2620.535 kb on - strand, within ECD_02506 at 2620.553 kb on + strand, within ECD_02506 at 2620.554 kb on - strand, within ECD_02506 at 2620.554 kb on - strand, within ECD_02506 at 2620.670 kb on - strand, within ECD_02506 at 2620.670 kb on - strand, within ECD_02506 at 2620.670 kb on - strand, within ECD_02506 at 2620.670 kb on - strand, within ECD_02506 at 2620.692 kb on - strand at 2620.692 kb on - strand at 2620.703 kb on + strand at 2620.703 kb on + strand at 2620.703 kb on + strand at 2620.704 kb on - strand at 2620.704 kb on - strand at 2620.740 kb on + strand, within ECD_02507 at 2620.741 kb on - strand, within ECD_02507 at 2620.791 kb on + strand, within ECD_02507 at 2620.908 kb on + strand, within ECD_02507 at 2620.909 kb on - strand, within ECD_02507 at 2621.158 kb on + strand at 2621.158 kb on + strand at 2621.158 kb on + strand at 2621.158 kb on + strand at 2621.159 kb on - strand at 2621.159 kb on - strand at 2621.159 kb on - strand at 2621.161 kb on + strand at 2621.168 kb on + strand at 2621.179 kb on - strand at 2621.222 kb on + strand at 2621.222 kb on + strand at 2621.222 kb on + strand at 2621.227 kb on + strand at 2621.227 kb on + strand at 2621.297 kb on + strand at 2621.297 kb on + strand at 2621.318 kb on + strand at 2621.318 kb on + strand at 2621.318 kb on + strand at 2621.368 kb on - strand, within ECD_02508 at 2621.460 kb on + strand, within ECD_02508 at 2621.460 kb on + strand, within ECD_02508 at 2621.460 kb on + strand, within ECD_02508 at 2621.461 kb on - strand, within ECD_02508 at 2621.623 kb on - strand, within ECD_02508 at 2621.623 kb on - strand, within ECD_02508 at 2621.756 kb on + strand at 2621.757 kb on - strand at 2621.795 kb on + strand at 2621.795 kb on + strand at 2621.795 kb on + strand at 2621.795 kb on + strand at 2621.796 kb on - strand at 2621.848 kb on + strand at 2621.848 kb on + strand at 2621.849 kb on - strand at 2621.911 kb on + strand at 2621.922 kb on + strand at 2621.977 kb on + strand at 2621.977 kb on + strand at 2621.977 kb on + strand at 2621.977 kb on + strand at 2621.977 kb on + strand at 2621.977 kb on + strand at 2621.977 kb on + strand at 2621.977 kb on + strand at 2621.977 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.981 kb on + strand at 2621.987 kb on + strand at 2621.987 kb on + strand at 2621.987 kb on + strand at 2621.987 kb on + strand at 2621.987 kb on + strand at 2621.987 kb on + strand at 2622.099 kb on + strand at 2622.106 kb on + strand at 2622.106 kb on + strand at 2622.106 kb on + strand at 2622.106 kb on + strand at 2622.106 kb on + strand at 2622.114 kb on + strand at 2622.114 kb on + strand at 2622.114 kb on + strand at 2622.114 kb on + strand at 2622.114 kb on + strand at 2622.115 kb on + strand at 2622.117 kb on + strand at 2622.117 kb on + strand at 2622.126 kb on + strand at 2622.126 kb on + strand at 2622.126 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 2,619,703 + +1.1 2,619,704 - -1.3 2,619,704 - +0.9 2,619,819 + -0.1 2,619,819 + -1.0 2,619,819 + +0.6 2,619,820 - +0.2 2,619,820 - +0.4 2,619,820 - +0.2 2,619,820 - -0.4 2,619,820 - -0.7 2,619,820 - +0.1 2,619,820 - +0.3 2,619,823 - -0.1 2,619,823 - -0.2 2,619,885 + -0.8 2,619,886 - -0.5 2,619,925 + +0.2 2,619,942 + +0.5 2,619,942 + +0.4 2,619,942 + -0.5 2,619,942 + -0.8 2,619,942 + -0.1 2,619,942 + +1.4 2,619,942 + +0.1 2,619,943 - +0.2 2,619,945 + -0.2 2,619,945 + +0.1 2,619,945 + +0.3 2,619,946 - -0.2 2,619,946 - -0.5 2,619,946 - +0.3 2,619,956 + +0.1 2,619,956 + -0.7 2,619,956 + -1.4 2,619,956 + +0.6 2,619,956 + +1.2 2,619,956 + +0.7 2,619,956 + +0.2 2,619,956 + -1.4 2,619,956 + +0.3 2,619,959 + +1.1 2,619,959 + +0.0 2,619,959 + +0.1 2,619,960 - +0.6 2,619,974 + +0.0 2,619,974 + -0.3 2,619,974 + +0.4 2,619,974 + -0.1 2,619,974 + +0.3 2,619,974 + +1.1 2,619,974 + -1.2 2,619,974 + +0.1 2,620,006 + +0.3 2,620,007 - -0.2 2,620,015 + -0.3 2,620,015 + -0.5 2,620,041 + -0.4 2,620,041 + +0.7 2,620,044 + ECD_02505 0.11 -0.5 2,620,044 + ECD_02505 0.11 +1.8 2,620,044 + ECD_02505 0.11 +1.2 2,620,044 + ECD_02505 0.11 +0.1 2,620,044 + ECD_02505 0.11 +0.0 2,620,044 + ECD_02505 0.11 +0.7 2,620,044 + ECD_02505 0.11 +0.3 2,620,044 + ECD_02505 0.11 +0.2 2,620,044 + ECD_02505 0.11 +0.3 2,620,044 + ECD_02505 0.11 +0.7 2,620,044 + ECD_02505 0.11 +0.3 2,620,044 + ECD_02505 0.11 +0.8 2,620,044 + ECD_02505 0.11 +0.3 2,620,045 - ECD_02505 0.11 +0.3 2,620,115 + ECD_02505 0.32 +1.1 2,620,115 + ECD_02505 0.32 +0.6 2,620,115 + ECD_02505 0.32 -0.1 2,620,115 + ECD_02505 0.32 -0.2 2,620,116 - ECD_02505 0.32 -0.1 2,620,116 - ECD_02505 0.32 +1.8 2,620,134 + ECD_02505 0.37 +0.4 2,620,143 + ECD_02505 0.40 +0.0 2,620,143 + ECD_02505 0.40 -0.3 2,620,143 + ECD_02505 0.40 +0.7 2,620,143 + ECD_02505 0.40 -1.9 2,620,143 + ECD_02505 0.40 -0.2 2,620,143 + ECD_02505 0.40 -0.1 2,620,144 - ECD_02505 0.40 -0.5 2,620,176 - ECD_02505 0.49 -0.5 2,620,186 + ECD_02505 0.52 +0.4 2,620,214 - ECD_02505 0.61 -0.7 2,620,219 + ECD_02505 0.62 -0.3 2,620,219 + ECD_02505 0.62 -0.2 2,620,219 + ECD_02505 0.62 -0.2 2,620,220 - ECD_02505 0.62 -2.2 2,620,220 - ECD_02505 0.62 -0.7 2,620,229 + ECD_02505 0.65 -2.1 2,620,229 + ECD_02505 0.65 +1.0 2,620,229 + ECD_02505 0.65 +0.0 2,620,229 + ECD_02505 0.65 -0.4 2,620,229 + ECD_02505 0.65 -0.3 2,620,229 + ECD_02505 0.65 +0.6 2,620,229 + ECD_02505 0.65 -0.9 2,620,229 + ECD_02505 0.65 -1.0 2,620,229 + ECD_02505 0.65 +0.0 2,620,229 + ECD_02505 0.65 +1.3 2,620,229 + ECD_02505 0.65 +0.6 2,620,229 + ECD_02505 0.65 -0.4 2,620,229 + ECD_02505 0.65 -0.3 2,620,229 + ECD_02505 0.65 +0.9 2,620,229 + ECD_02505 0.65 +0.4 2,620,229 + ECD_02505 0.65 +0.6 2,620,229 + ECD_02505 0.65 -0.7 2,620,229 + ECD_02505 0.65 +0.3 2,620,229 + ECD_02505 0.65 -0.2 2,620,229 + ECD_02505 0.65 +0.5 2,620,229 + ECD_02505 0.65 +0.7 2,620,230 - ECD_02505 0.65 +0.9 2,620,230 - ECD_02505 0.65 -0.7 2,620,230 - ECD_02505 0.65 -0.9 2,620,230 - ECD_02505 0.65 +0.2 2,620,230 - ECD_02505 0.65 -0.1 2,620,263 + ECD_02505 0.75 -0.1 2,620,263 + ECD_02505 0.75 -0.1 2,620,263 + ECD_02505 0.75 +0.4 2,620,263 + ECD_02505 0.75 -0.0 2,620,263 + ECD_02505 0.75 -0.1 2,620,263 + ECD_02505 0.75 -0.2 2,620,263 + ECD_02505 0.75 -1.3 2,620,263 + ECD_02505 0.75 +0.1 2,620,316 - +1.6 2,620,322 - +1.6 2,620,342 + -0.4 2,620,346 + +0.3 2,620,346 + -0.6 2,620,346 + -0.7 2,620,346 + +0.1 2,620,347 - -2.0 2,620,347 - -0.7 2,620,349 + +0.1 2,620,352 + +0.2 2,620,415 + -1.7 2,620,416 - +0.4 2,620,416 - +0.4 2,620,478 - ECD_02506 0.23 +0.0 2,620,478 - ECD_02506 0.23 +0.3 2,620,516 - ECD_02506 0.36 -1.7 2,620,535 - ECD_02506 0.43 +1.2 2,620,535 - ECD_02506 0.43 -0.2 2,620,535 - ECD_02506 0.43 -0.5 2,620,553 + ECD_02506 0.49 +0.5 2,620,554 - ECD_02506 0.49 +0.0 2,620,554 - ECD_02506 0.49 -0.2 2,620,670 - ECD_02506 0.89 +0.5 2,620,670 - ECD_02506 0.89 -0.2 2,620,670 - ECD_02506 0.89 -1.1 2,620,670 - ECD_02506 0.89 -1.1 2,620,692 - +0.6 2,620,692 - +0.1 2,620,703 + -1.9 2,620,703 + -0.8 2,620,703 + -0.5 2,620,704 - -0.9 2,620,704 - -3.3 2,620,740 + ECD_02507 0.10 -1.3 2,620,741 - ECD_02507 0.11 -0.7 2,620,791 + ECD_02507 0.21 -2.5 2,620,908 + ECD_02507 0.46 -2.5 2,620,909 - ECD_02507 0.46 -0.3 2,621,158 + -1.7 2,621,158 + +0.3 2,621,158 + +0.0 2,621,158 + -0.7 2,621,159 - -0.2 2,621,159 - +1.0 2,621,159 - -0.7 2,621,161 + +0.2 2,621,168 + +0.5 2,621,179 - -0.3 2,621,222 + -0.9 2,621,222 + +0.6 2,621,222 + -0.4 2,621,227 + +0.0 2,621,227 + -0.1 2,621,297 + +0.2 2,621,297 + -0.1 2,621,318 + +1.0 2,621,318 + -0.4 2,621,318 + +0.6 2,621,368 - ECD_02508 0.14 -1.0 2,621,460 + ECD_02508 0.34 -0.3 2,621,460 + ECD_02508 0.34 +0.6 2,621,460 + ECD_02508 0.34 +0.2 2,621,461 - ECD_02508 0.34 +0.6 2,621,623 - ECD_02508 0.67 -1.4 2,621,623 - ECD_02508 0.67 +1.6 2,621,756 + +2.8 2,621,757 - -2.3 2,621,795 + +1.4 2,621,795 + +0.4 2,621,795 + -0.1 2,621,795 + -0.7 2,621,796 - -0.9 2,621,848 + -1.0 2,621,848 + -1.4 2,621,849 - -0.4 2,621,911 + +0.1 2,621,922 + -0.1 2,621,977 + +1.1 2,621,977 + -1.6 2,621,977 + -0.1 2,621,977 + -2.4 2,621,977 + -1.2 2,621,977 + -1.0 2,621,977 + +0.1 2,621,977 + -0.5 2,621,977 + -1.5 2,621,981 + -0.5 2,621,981 + -0.7 2,621,981 + -0.2 2,621,981 + -0.2 2,621,981 + -0.9 2,621,981 + -0.2 2,621,981 + +1.6 2,621,981 + -0.2 2,621,981 + -1.0 2,621,981 + -0.6 2,621,981 + -0.3 2,621,981 + -1.2 2,621,981 + +0.3 2,621,981 + -1.0 2,621,981 + -1.4 2,621,981 + -0.9 2,621,981 + -2.1 2,621,981 + -1.2 2,621,987 + -0.7 2,621,987 + -0.7 2,621,987 + +0.2 2,621,987 + -0.9 2,621,987 + +0.2 2,621,987 + -0.6 2,622,099 + -0.4 2,622,106 + +0.1 2,622,106 + -1.9 2,622,106 + -0.8 2,622,106 + -0.4 2,622,106 + -0.2 2,622,114 + +1.6 2,622,114 + -1.3 2,622,114 + -1.9 2,622,114 + -0.5 2,622,114 + -1.2 2,622,115 + -0.7 2,622,117 + -1.6 2,622,117 + +0.6 2,622,126 + +0.2 2,622,126 + -1.8 2,622,126 + +1.2
Or see this region's nucleotide sequence