Strain Fitness in Escherichia coli BL21 around ECD_02103

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02102 and ECD_02103 are separated by 117 nucleotidesECD_02103 and ECD_02104 are separated by 38 nucleotides ECD_02102: ECD_02102 - putative NAD-dependent D-mannonate oxidoreductase, at 2,161,094 to 2,162,560 _02102 ECD_02103: ECD_02103 - Zn-stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein, at 2,162,678 to 2,163,664 _02103 ECD_02104: ECD_02104 - lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase, at 2,163,703 to 2,164,416 _02104 Position (kb) 2162 2163 2164Strain fitness (log2 ratio) -1 0 1at 2162.003 kb on + strand, within ECD_02102at 2162.082 kb on + strand, within ECD_02102at 2162.083 kb on - strand, within ECD_02102at 2162.117 kb on - strand, within ECD_02102at 2162.131 kb on - strand, within ECD_02102at 2162.152 kb on - strand, within ECD_02102at 2162.253 kb on + strand, within ECD_02102at 2162.651 kb on - strandat 2162.655 kb on + strandat 2162.656 kb on - strandat 2162.908 kb on + strand, within ECD_02103at 2163.211 kb on - strand, within ECD_02103at 2163.336 kb on + strand, within ECD_02103at 2163.690 kb on - strandat 2163.725 kb on + strandat 2163.769 kb on + strandat 2163.972 kb on + strand, within ECD_02104at 2163.981 kb on + strand, within ECD_02104at 2164.001 kb on + strand, within ECD_02104at 2164.346 kb on + strandat 2164.414 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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2,162,003 + ECD_02102 0.62 -1.2
2,162,082 + ECD_02102 0.67 +1.0
2,162,083 - ECD_02102 0.67 +0.7
2,162,117 - ECD_02102 0.70 -0.2
2,162,131 - ECD_02102 0.71 -0.4
2,162,152 - ECD_02102 0.72 +0.5
2,162,253 + ECD_02102 0.79 -0.4
2,162,651 - +0.3
2,162,655 + +0.5
2,162,656 - -0.3
2,162,908 + ECD_02103 0.23 -0.9
2,163,211 - ECD_02103 0.54 -0.6
2,163,336 + ECD_02103 0.67 +0.0
2,163,690 - +0.0
2,163,725 + -0.1
2,163,769 + +0.5
2,163,972 + ECD_02104 0.38 -0.2
2,163,981 + ECD_02104 0.39 +0.9
2,164,001 + ECD_02104 0.42 -0.6
2,164,346 + +0.8
2,164,414 + -0.2

Or see this region's nucleotide sequence