Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01480 and ECD_01481 overlap by 1 nucleotides ECD_01481 and ECD_01482 are separated by 63 nucleotides ECD_01482 and ECD_01483 are separated by 100 nucleotides
ECD_01480: ECD_01480 - DUF4186 family protein, at 1,560,539 to 1,560,898
_01480
ECD_01481: ECD_01481 - glutaminase 2, at 1,560,898 to 1,561,824
_01481
ECD_01482: ECD_01482 - succinate semialdehyde dehydrogenase, NAD(P)+-dependent, at 1,561,888 to 1,563,276
_01482
ECD_01483: ECD_01483 - putative DNA-binding transcriptional regulator, at 1,563,377 to 1,564,258
_01483
Position (kb) 1561
1562
1563
1564 Strain fitness (log2 ratio) -1
0
1 at 1561.171 kb on - strand, within ECD_01481 at 1561.414 kb on - strand, within ECD_01481 at 1561.496 kb on - strand, within ECD_01481 at 1561.497 kb on + strand, within ECD_01481 at 1561.498 kb on - strand, within ECD_01481 at 1561.692 kb on + strand, within ECD_01481 at 1561.865 kb on - strand at 1562.333 kb on - strand, within ECD_01482 at 1562.800 kb on - strand, within ECD_01482 at 1562.804 kb on - strand, within ECD_01482 at 1563.645 kb on + strand, within ECD_01483
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 1,561,171 - ECD_01481 0.29 +0.5 1,561,414 - ECD_01481 0.56 +0.7 1,561,496 - ECD_01481 0.65 -0.4 1,561,497 + ECD_01481 0.65 +1.4 1,561,498 - ECD_01481 0.65 -0.1 1,561,692 + ECD_01481 0.86 -1.4 1,561,865 - +0.4 1,562,333 - ECD_01482 0.32 -0.3 1,562,800 - ECD_01482 0.66 -0.3 1,562,804 - ECD_01482 0.66 -0.3 1,563,645 + ECD_01483 0.30 -0.0
Or see this region's nucleotide sequence