Strain Fitness in Escherichia coli BL21 around ECD_01237

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01236 and ECD_01237 are separated by 3 nucleotidesECD_01237 and ECD_01238 overlap by 1 nucleotides ECD_01236: ECD_01236 - indole-3-glycerolphosphate synthetase and N-(5-phosphoribosyl)anthranilate isomerase, at 1,304,019 to 1,305,377 _01236 ECD_01237: ECD_01237 - fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase, at 1,305,381 to 1,306,976 _01237 ECD_01238: ECD_01238 - component I of anthranilate synthase, at 1,306,976 to 1,308,538 _01238 Position (kb) 1305 1306 1307Strain fitness (log2 ratio) -2 -1 0 1at 1304.409 kb on - strand, within ECD_01236at 1304.546 kb on - strand, within ECD_01236at 1304.564 kb on - strand, within ECD_01236at 1304.724 kb on - strand, within ECD_01236at 1304.724 kb on - strand, within ECD_01236at 1304.973 kb on + strand, within ECD_01236at 1304.973 kb on + strand, within ECD_01236at 1304.974 kb on - strand, within ECD_01236at 1304.993 kb on - strand, within ECD_01236at 1305.039 kb on - strand, within ECD_01236at 1305.383 kb on - strandat 1305.436 kb on - strandat 1305.493 kb on - strandat 1305.650 kb on - strand, within ECD_01237at 1305.943 kb on - strand, within ECD_01237at 1305.943 kb on - strand, within ECD_01237at 1306.112 kb on + strand, within ECD_01237at 1306.165 kb on + strand, within ECD_01237at 1306.396 kb on - strand, within ECD_01237at 1306.527 kb on - strand, within ECD_01237at 1306.779 kb on - strand, within ECD_01237at 1306.857 kb on + strandat 1306.934 kb on - strandat 1306.934 kb on - strandat 1306.938 kb on - strandat 1307.228 kb on + strand, within ECD_01238at 1307.244 kb on - strand, within ECD_01238at 1307.598 kb on + strand, within ECD_01238at 1307.599 kb on - strand, within ECD_01238at 1307.599 kb on - strand, within ECD_01238at 1307.664 kb on + strand, within ECD_01238at 1307.664 kb on + strand, within ECD_01238at 1307.695 kb on - strand, within ECD_01238at 1307.895 kb on - strand, within ECD_01238

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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1,304,409 - ECD_01236 0.29 +0.1
1,304,546 - ECD_01236 0.39 +1.2
1,304,564 - ECD_01236 0.40 -1.8
1,304,724 - ECD_01236 0.52 +0.6
1,304,724 - ECD_01236 0.52 -0.4
1,304,973 + ECD_01236 0.70 -0.5
1,304,973 + ECD_01236 0.70 +1.0
1,304,974 - ECD_01236 0.70 -0.4
1,304,993 - ECD_01236 0.72 +0.5
1,305,039 - ECD_01236 0.75 -0.0
1,305,383 - +0.7
1,305,436 - -0.4
1,305,493 - -0.1
1,305,650 - ECD_01237 0.17 -1.7
1,305,943 - ECD_01237 0.35 +0.0
1,305,943 - ECD_01237 0.35 +1.3
1,306,112 + ECD_01237 0.46 -1.1
1,306,165 + ECD_01237 0.49 -2.1
1,306,396 - ECD_01237 0.64 -0.3
1,306,527 - ECD_01237 0.72 -1.4
1,306,779 - ECD_01237 0.88 -0.4
1,306,857 + +0.1
1,306,934 - +1.0
1,306,934 - +1.0
1,306,938 - -0.8
1,307,228 + ECD_01238 0.16 +0.9
1,307,244 - ECD_01238 0.17 +0.6
1,307,598 + ECD_01238 0.40 +1.3
1,307,599 - ECD_01238 0.40 -0.6
1,307,599 - ECD_01238 0.40 +1.0
1,307,664 + ECD_01238 0.44 +0.7
1,307,664 + ECD_01238 0.44 +0.5
1,307,695 - ECD_01238 0.46 -0.1
1,307,895 - ECD_01238 0.59 +1.1

Or see this region's nucleotide sequence