Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00971 and ECD_00972 are separated by 94 nucleotides ECD_00972 and ECD_00973 overlap by 4 nucleotides ECD_00973 and ECD_00974 are separated by 90 nucleotides
ECD_00971: ECD_00971 - 23S rRNA m(5)C1962 methyltransferase, SAM-dependent, at 1,033,868 to 1,035,058
_00971
ECD_00972: ECD_00972 - weak acylphosphatase, at 1,035,153 to 1,035,431
_00972
ECD_00973: ECD_00973 - mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase, at 1,035,428 to 1,035,757
_00973
ECD_00974: ECD_00974 - Modulator of FtsH protease, inner membrane protein, at 1,035,848 to 1,036,507
_00974
Position (kb) 1035
1036 Strain fitness (log2 ratio) -1
0
1 at 1034.203 kb on + strand, within ECD_00971 at 1034.203 kb on + strand, within ECD_00971 at 1034.204 kb on - strand, within ECD_00971 at 1034.204 kb on - strand, within ECD_00971 at 1034.370 kb on + strand, within ECD_00971 at 1034.573 kb on - strand, within ECD_00971 at 1034.713 kb on + strand, within ECD_00971 at 1034.714 kb on - strand, within ECD_00971 at 1034.714 kb on - strand, within ECD_00971 at 1034.755 kb on - strand, within ECD_00971 at 1035.169 kb on + strand at 1035.935 kb on - strand, within ECD_00974 at 1035.937 kb on - strand, within ECD_00974 at 1035.937 kb on - strand, within ECD_00974 at 1036.141 kb on - strand, within ECD_00974 at 1036.141 kb on - strand, within ECD_00974
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 1,034,203 + ECD_00971 0.28 +1.0 1,034,203 + ECD_00971 0.28 -0.9 1,034,204 - ECD_00971 0.28 +1.0 1,034,204 - ECD_00971 0.28 +0.5 1,034,370 + ECD_00971 0.42 -0.0 1,034,573 - ECD_00971 0.59 +1.3 1,034,713 + ECD_00971 0.71 +0.6 1,034,714 - ECD_00971 0.71 +0.2 1,034,714 - ECD_00971 0.71 +0.3 1,034,755 - ECD_00971 0.74 +1.4 1,035,169 + -0.2 1,035,935 - ECD_00974 0.13 -0.2 1,035,937 - ECD_00974 0.13 -0.5 1,035,937 - ECD_00974 0.13 -0.8 1,036,141 - ECD_00974 0.44 +1.0 1,036,141 - ECD_00974 0.44 -1.7
Or see this region's nucleotide sequence