Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00897 and ECD_00898 are separated by 238 nucleotides ECD_00898 and ECD_00899 are separated by 10 nucleotides ECD_00899 and ECD_00900 are separated by 1 nucleotides
ECD_00897: ECD_00897 - seryl-tRNA synthetase, at 944,519 to 945,811
_00897
ECD_00898: ECD_00898 - dimethyl sulfoxide reductase, anaerobic, subunit A, at 946,050 to 948,494
_00898
ECD_00899: ECD_00899 - dimethyl sulfoxide reductase, anaerobic, subunit B, at 948,505 to 949,122
_00899
ECD_00900: ECD_00900 - dimethyl sulfoxide reductase, anaerobic, subunit C, at 949,124 to 949,987
_00900
Position (kb) 946
947
948
949 Strain fitness (log2 ratio) -2
-1
0
1
2 at 945.970 kb on + strand at 945.972 kb on + strand at 945.985 kb on + strand at 946.153 kb on + strand at 946.238 kb on + strand at 946.239 kb on - strand at 946.244 kb on + strand at 946.271 kb on + strand at 946.271 kb on + strand at 946.271 kb on + strand at 946.271 kb on + strand at 946.272 kb on - strand at 946.300 kb on - strand, within ECD_00898 at 946.463 kb on + strand, within ECD_00898 at 946.463 kb on + strand, within ECD_00898 at 946.535 kb on + strand, within ECD_00898 at 946.693 kb on - strand, within ECD_00898 at 946.810 kb on - strand, within ECD_00898 at 947.014 kb on - strand, within ECD_00898 at 947.322 kb on + strand, within ECD_00898 at 947.695 kb on - strand, within ECD_00898 at 948.082 kb on - strand, within ECD_00898 at 948.154 kb on - strand, within ECD_00898 at 948.177 kb on + strand, within ECD_00898 at 948.410 kb on + strand at 948.415 kb on + strand at 948.464 kb on + strand at 948.689 kb on - strand, within ECD_00899 at 948.705 kb on + strand, within ECD_00899 at 948.870 kb on + strand, within ECD_00899 at 949.182 kb on + strand at 949.310 kb on - strand, within ECD_00900
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 945,970 + -0.9 945,972 + -0.6 945,985 + +0.2 946,153 + -0.2 946,238 + -1.0 946,239 - -0.0 946,244 + +1.3 946,271 + -0.2 946,271 + +2.4 946,271 + -0.9 946,271 + +0.5 946,272 - +0.4 946,300 - ECD_00898 0.10 +0.7 946,463 + ECD_00898 0.17 -0.9 946,463 + ECD_00898 0.17 -1.8 946,535 + ECD_00898 0.20 -0.1 946,693 - ECD_00898 0.26 -0.2 946,810 - ECD_00898 0.31 -1.0 947,014 - ECD_00898 0.39 +1.4 947,322 + ECD_00898 0.52 +0.3 947,695 - ECD_00898 0.67 +0.2 948,082 - ECD_00898 0.83 +0.4 948,154 - ECD_00898 0.86 +0.0 948,177 + ECD_00898 0.87 -0.1 948,410 + +0.3 948,415 + +2.0 948,464 + -1.7 948,689 - ECD_00899 0.30 +0.0 948,705 + ECD_00899 0.32 +1.0 948,870 + ECD_00899 0.59 +1.8 949,182 + +0.1 949,310 - ECD_00900 0.22 +0.2
Or see this region's nucleotide sequence