Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00878 and ECD_00879 are separated by 143 nucleotides ECD_00879 and ECD_00880 are separated by 494 nucleotides
ECD_00878: ECD_00878 - hybrid-cluster [4Fe-2S-2O] subunit of anaerobic terminal reductases, at 916,866 to 918,518
_00878
ECD_00879: ECD_00879 - putative transporter, at 918,662 to 919,561
_00879
ECD_00880: ECD_00880 - aquaporin Z, at 920,056 to 920,751
_00880
Position (kb) 918
919
920 Strain fitness (log2 ratio) -2
-1
0
1
2 at 917.843 kb on - strand, within ECD_00878 at 917.981 kb on - strand, within ECD_00878 at 917.996 kb on - strand, within ECD_00878 at 918.026 kb on - strand, within ECD_00878 at 918.099 kb on - strand, within ECD_00878 at 918.408 kb on + strand at 918.664 kb on - strand at 918.755 kb on - strand, within ECD_00879 at 918.850 kb on + strand, within ECD_00879 at 918.851 kb on - strand, within ECD_00879 at 919.133 kb on + strand, within ECD_00879 at 919.176 kb on - strand, within ECD_00879 at 919.176 kb on - strand, within ECD_00879 at 919.176 kb on - strand, within ECD_00879 at 919.337 kb on - strand, within ECD_00879 at 919.445 kb on - strand, within ECD_00879 at 919.466 kb on + strand, within ECD_00879 at 919.466 kb on + strand, within ECD_00879 at 919.697 kb on + strand at 919.710 kb on + strand at 919.955 kb on + strand at 919.964 kb on + strand at 919.964 kb on + strand at 919.965 kb on - strand at 920.006 kb on - strand at 920.017 kb on - strand at 920.035 kb on - strand at 920.197 kb on - strand, within ECD_00880 at 920.449 kb on + strand, within ECD_00880
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 917,843 - ECD_00878 0.59 +0.7 917,981 - ECD_00878 0.67 +0.0 917,996 - ECD_00878 0.68 +1.4 918,026 - ECD_00878 0.70 +1.2 918,099 - ECD_00878 0.75 +0.4 918,408 + +0.4 918,664 - +0.1 918,755 - ECD_00879 0.10 -0.2 918,850 + ECD_00879 0.21 +0.7 918,851 - ECD_00879 0.21 -1.2 919,133 + ECD_00879 0.52 +0.1 919,176 - ECD_00879 0.57 -0.1 919,176 - ECD_00879 0.57 -0.2 919,176 - ECD_00879 0.57 +1.9 919,337 - ECD_00879 0.75 +0.0 919,445 - ECD_00879 0.87 +0.3 919,466 + ECD_00879 0.89 +1.2 919,466 + ECD_00879 0.89 +0.7 919,697 + -1.2 919,710 + -0.1 919,955 + +0.2 919,964 + -0.4 919,964 + -0.4 919,965 - -0.6 920,006 - +1.2 920,017 - +0.5 920,035 - +1.0 920,197 - ECD_00880 0.20 +0.3 920,449 + ECD_00880 0.56 -2.5
Or see this region's nucleotide sequence