Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00586 and ECD_00587 are separated by 85 nucleotides ECD_00587 and ECD_00588 overlap by 82 nucleotides ECD_00588 and ECD_00589 are separated by 132 nucleotides
ECD_00586: ECD_00586 - citrate lyase ligase; [citrate [pro-3S]-lyase] ligase, at 610,628 to 611,686
_00586
ECD_00587: ECD_00587 - IS1 protein InsB, at 611,772 to 612,275
_00587
ECD_00588: ECD_00588 - IS1 protein InsA, at 612,194 to 612,469
_00588
ECD_00589: ECD_00589 - sensory histidine kinase in two-component regulatory system with CitB, at 612,602 to 614,260
_00589
Position (kb) 612
613 Strain fitness (log2 ratio) -2
-1
0
1
2 at 611.199 kb on + strand, within ECD_00586 at 611.515 kb on + strand, within ECD_00586 at 611.515 kb on + strand, within ECD_00586 at 611.573 kb on + strand, within ECD_00586 at 611.690 kb on - strand at 611.690 kb on - strand at 611.694 kb on - strand at 612.528 kb on - strand at 612.531 kb on - strand at 612.560 kb on + strand at 612.614 kb on - strand at 612.623 kb on - strand at 612.744 kb on - strand at 612.867 kb on + strand, within ECD_00589 at 612.868 kb on - strand, within ECD_00589 at 612.891 kb on - strand, within ECD_00589 at 613.001 kb on + strand, within ECD_00589 at 613.001 kb on + strand, within ECD_00589 at 613.002 kb on - strand, within ECD_00589 at 613.120 kb on + strand, within ECD_00589 at 613.285 kb on + strand, within ECD_00589 at 613.328 kb on + strand, within ECD_00589 at 613.328 kb on + strand, within ECD_00589 at 613.329 kb on - strand, within ECD_00589 at 613.399 kb on + strand, within ECD_00589
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 611,199 + ECD_00586 0.54 -0.1 611,515 + ECD_00586 0.84 +1.0 611,515 + ECD_00586 0.84 -1.4 611,573 + ECD_00586 0.89 +0.2 611,690 - +0.2 611,690 - -0.8 611,694 - +0.6 612,528 - +0.6 612,531 - +0.6 612,560 + +0.7 612,614 - -0.9 612,623 - -0.1 612,744 - +0.1 612,867 + ECD_00589 0.16 -1.0 612,868 - ECD_00589 0.16 +0.0 612,891 - ECD_00589 0.17 -1.1 613,001 + ECD_00589 0.24 +0.9 613,001 + ECD_00589 0.24 +0.2 613,002 - ECD_00589 0.24 -2.0 613,120 + ECD_00589 0.31 +1.9 613,285 + ECD_00589 0.41 -0.0 613,328 + ECD_00589 0.44 +0.1 613,328 + ECD_00589 0.44 -1.1 613,329 - ECD_00589 0.44 -0.2 613,399 + ECD_00589 0.48 +0.1
Or see this region's nucleotide sequence