Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00561 and ECD_00562 are separated by 13 nucleotides ECD_00562 and ECD_00563 overlap by 1 nucleotides ECD_00563 and ECD_00564 are separated by 2 nucleotides
ECD_00561: ECD_00561 - 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex, at 586,557 to 588,167
_00561
ECD_00562: ECD_00562 - isochorismatase, at 588,181 to 589,038
_00562
ECD_00563: ECD_00563 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 589,038 to 589,784
_00563
ECD_00564: ECD_00564 - enterobactin synthesis proofreading thioesterase, at 589,787 to 590,200
_00564
Position (kb) 589
590 Strain fitness (log2 ratio) -2
-1
0
1
2 at 588.133 kb on + strand at 588.133 kb on + strand at 588.205 kb on + strand at 588.281 kb on + strand, within ECD_00562 at 588.282 kb on - strand, within ECD_00562 at 588.376 kb on + strand, within ECD_00562 at 588.393 kb on + strand, within ECD_00562 at 588.406 kb on + strand, within ECD_00562 at 588.459 kb on + strand, within ECD_00562 at 588.459 kb on + strand, within ECD_00562 at 588.459 kb on + strand, within ECD_00562 at 588.459 kb on + strand, within ECD_00562 at 588.622 kb on - strand, within ECD_00562 at 588.632 kb on + strand, within ECD_00562 at 588.651 kb on + strand, within ECD_00562 at 588.684 kb on + strand, within ECD_00562 at 588.688 kb on - strand, within ECD_00562 at 588.696 kb on + strand, within ECD_00562 at 588.810 kb on + strand, within ECD_00562 at 589.016 kb on + strand at 589.092 kb on + strand at 589.186 kb on + strand, within ECD_00563 at 589.186 kb on + strand, within ECD_00563 at 589.222 kb on + strand, within ECD_00563 at 589.223 kb on - strand, within ECD_00563 at 589.457 kb on + strand, within ECD_00563 at 589.458 kb on - strand, within ECD_00563 at 589.544 kb on + strand, within ECD_00563 at 589.545 kb on - strand, within ECD_00563 at 589.577 kb on + strand, within ECD_00563 at 589.782 kb on + strand at 589.783 kb on - strand at 589.999 kb on + strand, within ECD_00564 at 590.266 kb on - strand at 590.381 kb on - strand at 590.447 kb on + strand at 590.448 kb on - strand at 590.509 kb on + strand at 590.514 kb on - strand at 590.543 kb on + strand at 590.543 kb on + strand at 590.543 kb on + strand at 590.543 kb on + strand at 590.618 kb on + strand at 590.779 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 588,133 + -0.7 588,133 + +0.4 588,205 + -1.4 588,281 + ECD_00562 0.12 +2.2 588,282 - ECD_00562 0.12 -1.4 588,376 + ECD_00562 0.23 +1.4 588,393 + ECD_00562 0.25 -0.2 588,406 + ECD_00562 0.26 -0.3 588,459 + ECD_00562 0.32 +0.5 588,459 + ECD_00562 0.32 +0.3 588,459 + ECD_00562 0.32 +0.7 588,459 + ECD_00562 0.32 +1.3 588,622 - ECD_00562 0.51 -0.1 588,632 + ECD_00562 0.53 -1.8 588,651 + ECD_00562 0.55 -0.2 588,684 + ECD_00562 0.59 +0.4 588,688 - ECD_00562 0.59 +1.1 588,696 + ECD_00562 0.60 +0.5 588,810 + ECD_00562 0.73 +0.6 589,016 + +0.4 589,092 + +0.1 589,186 + ECD_00563 0.20 +0.5 589,186 + ECD_00563 0.20 +1.2 589,222 + ECD_00563 0.25 +0.1 589,223 - ECD_00563 0.25 -0.5 589,457 + ECD_00563 0.56 +0.4 589,458 - ECD_00563 0.56 +0.6 589,544 + ECD_00563 0.68 +1.4 589,545 - ECD_00563 0.68 -1.2 589,577 + ECD_00563 0.72 +0.9 589,782 + -0.4 589,783 - -0.2 589,999 + ECD_00564 0.51 -0.4 590,266 - +0.8 590,381 - +0.9 590,447 + +0.7 590,448 - +1.0 590,509 + +1.6 590,514 - -0.2 590,543 + +0.9 590,543 + -1.0 590,543 + +0.2 590,543 + +0.6 590,618 + +0.1 590,779 + -0.1
Or see this region's nucleotide sequence