Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00487 and ECD_00488 are separated by 267 nucleotides ECD_00488 and ECD_00489 are separated by 98 nucleotides ECD_00489 and ECD_00490 overlap by 23 nucleotides ECD_00490 and ECD_00492 are separated by 86 nucleotides ECD_00492 and ECD_00493 are separated by 67 nucleotides ECD_00493 and ECD_00494 are separated by 254 nucleotides
ECD_00487: ECD_00487 - Excisionase, at 534,927 to 535,328
_00487
ECD_00488: ECD_00488 - hypothetical protein, at 535,596 to 535,814
_00488
ECD_00489: ECD_00489 - hypothetical protein, at 535,913 to 536,227
_00489
ECD_00490: ECD_00490 - putative DNA N-6-adenine-methyltransferase of bacteriophage, at 536,205 to 536,570
_00490
ECD_00492: ECD_00492 - hypothetical protein, at 536,657 to 536,842
_00492
ECD_00493: ECD_00493 - DLP12 prophage; multidrug resistance protein, at 536,910 to 537,242
_00493
ECD_00494: ECD_00494 - DLP12 prophage; putative recombinase, at 537,497 to 539,023
_00494
Position (kb) 536
537 Strain fitness (log2 ratio) -1
0
1 at 535.289 kb on - strand at 535.289 kb on - strand at 535.302 kb on + strand at 535.434 kb on + strand at 535.435 kb on - strand at 535.458 kb on - strand at 535.477 kb on - strand at 535.517 kb on + strand at 535.620 kb on - strand, within ECD_00488 at 535.845 kb on - strand at 535.845 kb on - strand at 536.274 kb on - strand, within ECD_00490 at 536.367 kb on - strand, within ECD_00490 at 536.455 kb on - strand, within ECD_00490 at 536.463 kb on + strand, within ECD_00490 at 536.464 kb on - strand, within ECD_00490 at 536.522 kb on + strand, within ECD_00490 at 536.530 kb on + strand, within ECD_00490 at 536.564 kb on - strand at 536.637 kb on + strand at 536.638 kb on - strand at 536.815 kb on + strand, within ECD_00492
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 535,289 - +0.9 535,289 - +0.3 535,302 + +0.5 535,434 + +0.7 535,435 - +0.6 535,458 - -0.0 535,477 - +0.2 535,517 + +0.0 535,620 - ECD_00488 0.11 +0.6 535,845 - +0.5 535,845 - +0.5 536,274 - ECD_00490 0.19 +1.6 536,367 - ECD_00490 0.44 +0.8 536,455 - ECD_00490 0.68 +0.4 536,463 + ECD_00490 0.70 +0.6 536,464 - ECD_00490 0.71 -0.3 536,522 + ECD_00490 0.87 -0.4 536,530 + ECD_00490 0.89 +0.8 536,564 - +0.2 536,637 + -0.9 536,638 - -1.1 536,815 + ECD_00492 0.85 +0.3
Or see this region's nucleotide sequence