Experiment: NophageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00376 and ECD_00377 are separated by 55 nucleotides ECD_00377 and ECD_00378 overlap by 17 nucleotides ECD_00378 and ECD_00379 are separated by 118 nucleotides
ECD_00376: ECD_00376 - hypothetical protein, at 412,484 to 413,419
_00376
ECD_00377: ECD_00377 - putative acetyltransferase, at 413,475 to 414,017
_00377
ECD_00378: ECD_00378 - hypothetical protein, at 414,001 to 414,378
_00378
ECD_00379: ECD_00379 - protoheme IX farnesyltransferase, at 414,497 to 415,387
_00379
Position (kb) 414
415 Strain fitness (log2 ratio) -1
0
1 at 413.515 kb on - strand at 413.515 kb on - strand at 413.613 kb on - strand, within ECD_00377 at 413.840 kb on + strand, within ECD_00377 at 413.966 kb on - strand at 413.970 kb on - strand at 413.994 kb on - strand at 414.313 kb on + strand, within ECD_00378 at 414.329 kb on - strand, within ECD_00378 at 414.368 kb on - strand at 414.438 kb on - strand at 414.457 kb on - strand at 414.471 kb on - strand at 414.520 kb on + strand at 414.632 kb on - strand, within ECD_00379 at 414.653 kb on + strand, within ECD_00379 at 414.690 kb on + strand, within ECD_00379 at 414.690 kb on + strand, within ECD_00379 at 414.691 kb on - strand, within ECD_00379 at 414.694 kb on + strand, within ECD_00379 at 414.695 kb on - strand, within ECD_00379 at 414.695 kb on - strand, within ECD_00379 at 414.751 kb on + strand, within ECD_00379 at 414.753 kb on + strand, within ECD_00379 at 414.791 kb on + strand, within ECD_00379 at 414.856 kb on - strand, within ECD_00379 at 415.008 kb on + strand, within ECD_00379 at 415.008 kb on + strand, within ECD_00379 at 415.009 kb on - strand, within ECD_00379 at 415.017 kb on + strand, within ECD_00379 at 415.018 kb on - strand, within ECD_00379 at 415.018 kb on - strand, within ECD_00379 at 415.029 kb on + strand, within ECD_00379 at 415.030 kb on - strand, within ECD_00379 at 415.094 kb on - strand, within ECD_00379 at 415.213 kb on - strand, within ECD_00379 at 415.266 kb on + strand, within ECD_00379 at 415.271 kb on - strand, within ECD_00379
Per-strain Table
Position Strand Gene LocusTag Fraction NophageControl remove 413,515 - +0.2 413,515 - +0.3 413,613 - ECD_00377 0.25 +0.3 413,840 + ECD_00377 0.67 -0.7 413,966 - +0.0 413,970 - +0.2 413,994 - +0.2 414,313 + ECD_00378 0.83 -0.9 414,329 - ECD_00378 0.87 -0.7 414,368 - -0.2 414,438 - -0.9 414,457 - +0.0 414,471 - +0.4 414,520 + -0.0 414,632 - ECD_00379 0.15 -0.8 414,653 + ECD_00379 0.18 -0.1 414,690 + ECD_00379 0.22 -0.4 414,690 + ECD_00379 0.22 -0.9 414,691 - ECD_00379 0.22 +0.3 414,694 + ECD_00379 0.22 +0.0 414,695 - ECD_00379 0.22 +0.4 414,695 - ECD_00379 0.22 +0.0 414,751 + ECD_00379 0.29 -0.5 414,753 + ECD_00379 0.29 +0.5 414,791 + ECD_00379 0.33 -0.4 414,856 - ECD_00379 0.40 +0.3 415,008 + ECD_00379 0.57 +1.2 415,008 + ECD_00379 0.57 -0.8 415,009 - ECD_00379 0.57 +0.5 415,017 + ECD_00379 0.58 +0.1 415,018 - ECD_00379 0.58 +0.3 415,018 - ECD_00379 0.58 +0.5 415,029 + ECD_00379 0.60 +0.9 415,030 - ECD_00379 0.60 +0.2 415,094 - ECD_00379 0.67 +0.7 415,213 - ECD_00379 0.80 +0.9 415,266 + ECD_00379 0.86 +0.1 415,271 - ECD_00379 0.87 -0.3
Or see this region's nucleotide sequence