Strain Fitness in Escherichia coli BL21 around ECD_00279

Experiment: NophageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00278 and ECD_00279 are separated by 9 nucleotidesECD_00279 and ECD_00280 are separated by 376 nucleotides ECD_00278: ECD_00278 - carbamate kinase-like protein, at 309,793 to 310,743 _00278 ECD_00279: ECD_00279 - putative metallo-dependent hydrolase domain deaminase, at 310,753 to 312,135 _00279 ECD_00280: ECD_00280 - broad specificity NADPH-dependent aldehyde reductase, Zn-containing, at 312,512 to 313,561 _00280 Position (kb) 310 311 312 313Strain fitness (log2 ratio) -2 -1 0 1at 309.786 kb on + strandat 309.844 kb on - strandat 310.044 kb on + strand, within ECD_00278at 310.087 kb on - strand, within ECD_00278at 310.309 kb on - strand, within ECD_00278at 310.358 kb on + strand, within ECD_00278at 310.518 kb on + strand, within ECD_00278at 310.519 kb on - strand, within ECD_00278at 310.582 kb on + strand, within ECD_00278at 310.583 kb on - strand, within ECD_00278at 310.584 kb on + strand, within ECD_00278at 310.728 kb on + strandat 310.750 kb on - strandat 310.828 kb on - strandat 310.828 kb on - strandat 310.913 kb on - strand, within ECD_00279at 310.915 kb on + strand, within ECD_00279at 310.915 kb on + strand, within ECD_00279at 310.915 kb on + strand, within ECD_00279at 310.916 kb on - strand, within ECD_00279at 310.916 kb on - strand, within ECD_00279at 311.068 kb on + strand, within ECD_00279at 311.115 kb on + strand, within ECD_00279at 311.115 kb on + strand, within ECD_00279at 311.115 kb on + strand, within ECD_00279at 311.116 kb on - strand, within ECD_00279at 311.233 kb on + strand, within ECD_00279at 311.234 kb on - strand, within ECD_00279at 311.267 kb on + strand, within ECD_00279at 311.267 kb on + strand, within ECD_00279at 311.268 kb on - strand, within ECD_00279at 311.473 kb on + strand, within ECD_00279at 311.617 kb on + strand, within ECD_00279at 311.617 kb on + strand, within ECD_00279at 311.618 kb on - strand, within ECD_00279at 311.618 kb on - strand, within ECD_00279at 311.618 kb on - strand, within ECD_00279at 311.618 kb on - strand, within ECD_00279at 311.618 kb on - strand, within ECD_00279at 311.711 kb on + strand, within ECD_00279at 311.751 kb on + strand, within ECD_00279at 311.751 kb on + strand, within ECD_00279at 311.784 kb on + strand, within ECD_00279at 311.863 kb on + strand, within ECD_00279at 311.864 kb on - strand, within ECD_00279at 311.899 kb on + strand, within ECD_00279at 311.911 kb on + strand, within ECD_00279at 311.912 kb on - strand, within ECD_00279at 311.912 kb on - strand, within ECD_00279at 311.969 kb on + strand, within ECD_00279at 311.970 kb on - strand, within ECD_00279at 311.970 kb on - strand, within ECD_00279at 312.072 kb on + strandat 312.073 kb on - strandat 312.165 kb on + strandat 312.165 kb on + strandat 312.168 kb on + strandat 312.168 kb on + strandat 312.177 kb on + strandat 312.177 kb on + strandat 312.206 kb on - strandat 312.233 kb on - strandat 312.266 kb on + strandat 312.274 kb on + strandat 312.274 kb on + strandat 312.321 kb on + strandat 312.334 kb on + strandat 312.343 kb on + strandat 312.423 kb on + strandat 312.427 kb on + strandat 312.434 kb on + strandat 312.434 kb on + strandat 312.434 kb on + strandat 312.435 kb on - strandat 312.468 kb on - strandat 312.484 kb on + strandat 312.484 kb on + strandat 312.490 kb on + strandat 312.490 kb on + strandat 312.490 kb on + strandat 312.490 kb on + strandat 312.491 kb on - strandat 312.491 kb on - strandat 312.491 kb on - strandat 312.536 kb on + strandat 312.851 kb on + strand, within ECD_00280at 312.852 kb on - strand, within ECD_00280at 312.852 kb on - strand, within ECD_00280at 312.853 kb on + strand, within ECD_00280at 312.883 kb on + strand, within ECD_00280

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Per-strain Table

Position Strand Gene LocusTag Fraction NophageControl
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309,786 + -0.4
309,844 - +1.5
310,044 + ECD_00278 0.26 -0.3
310,087 - ECD_00278 0.31 -0.6
310,309 - ECD_00278 0.54 +1.0
310,358 + ECD_00278 0.59 +0.0
310,518 + ECD_00278 0.76 +0.0
310,519 - ECD_00278 0.76 -0.4
310,582 + ECD_00278 0.83 +0.8
310,583 - ECD_00278 0.83 +0.4
310,584 + ECD_00278 0.83 +0.2
310,728 + -0.4
310,750 - +0.2
310,828 - +0.2
310,828 - +0.7
310,913 - ECD_00279 0.12 +1.0
310,915 + ECD_00279 0.12 +0.5
310,915 + ECD_00279 0.12 +0.3
310,915 + ECD_00279 0.12 +0.1
310,916 - ECD_00279 0.12 +0.8
310,916 - ECD_00279 0.12 +0.8
311,068 + ECD_00279 0.23 +0.4
311,115 + ECD_00279 0.26 -0.4
311,115 + ECD_00279 0.26 +0.3
311,115 + ECD_00279 0.26 -0.1
311,116 - ECD_00279 0.26 -0.3
311,233 + ECD_00279 0.35 -0.1
311,234 - ECD_00279 0.35 -0.8
311,267 + ECD_00279 0.37 +0.0
311,267 + ECD_00279 0.37 +0.8
311,268 - ECD_00279 0.37 +0.5
311,473 + ECD_00279 0.52 +0.1
311,617 + ECD_00279 0.62 -0.8
311,617 + ECD_00279 0.62 +1.0
311,618 - ECD_00279 0.63 -0.2
311,618 - ECD_00279 0.63 -0.3
311,618 - ECD_00279 0.63 -0.4
311,618 - ECD_00279 0.63 +0.6
311,618 - ECD_00279 0.63 +1.2
311,711 + ECD_00279 0.69 -0.5
311,751 + ECD_00279 0.72 +0.1
311,751 + ECD_00279 0.72 -1.2
311,784 + ECD_00279 0.75 -0.5
311,863 + ECD_00279 0.80 -2.2
311,864 - ECD_00279 0.80 +0.5
311,899 + ECD_00279 0.83 -0.4
311,911 + ECD_00279 0.84 -0.3
311,912 - ECD_00279 0.84 +1.1
311,912 - ECD_00279 0.84 -1.2
311,969 + ECD_00279 0.88 -0.5
311,970 - ECD_00279 0.88 -1.4
311,970 - ECD_00279 0.88 +0.6
312,072 + +0.5
312,073 - -0.5
312,165 + +0.3
312,165 + +0.4
312,168 + -0.1
312,168 + -0.4
312,177 + +1.1
312,177 + -0.6
312,206 - +1.6
312,233 - +0.8
312,266 + +0.9
312,274 + +0.6
312,274 + +0.3
312,321 + -0.2
312,334 + -0.5
312,343 + -0.3
312,423 + -0.2
312,427 + -0.5
312,434 + +0.3
312,434 + +1.5
312,434 + +0.0
312,435 - +0.5
312,468 - +0.9
312,484 + +0.1
312,484 + +0.9
312,490 + +0.9
312,490 + +0.1
312,490 + +0.4
312,490 + -0.2
312,491 - -1.5
312,491 - -0.8
312,491 - -0.5
312,536 + -0.4
312,851 + ECD_00280 0.32 +1.1
312,852 - ECD_00280 0.32 +0.6
312,852 - ECD_00280 0.32 -0.8
312,853 + ECD_00280 0.32 -0.2
312,883 + ECD_00280 0.35 +0.5

Or see this region's nucleotide sequence