Experiment: m.b. nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21580 and CA264_21585 are separated by 41 nucleotides CA264_21585 and CA264_21590 are separated by 48 nucleotides CA264_21590 and CA264_21595 are separated by 75 nucleotides CA264_21595 and CA264_21600 are separated by 379 nucleotides CA264_21600 and CA264_21605 are separated by 254 nucleotides
CA264_21580: CA264_21580 - hypothetical protein, at 183,836 to 184,834
_21580
CA264_21585: CA264_21585 - hypothetical protein, at 184,876 to 185,205
_21585
CA264_21590: CA264_21590 - SnoaL-like polyketide cyclase, at 185,254 to 185,643
_21590
CA264_21595: CA264_21595 - copper oxidase, at 185,719 to 188,283
_21595
CA264_21600: CA264_21600 - four-helix bundle copper-binding protein, at 188,663 to 188,986
_21600
CA264_21605: CA264_21605 - hypothetical protein, at 189,241 to 190,242
_21605
Position (kb) 185
186
187
188
189 Strain fitness (log2 ratio) -2
-1
0
1
2 at 184.747 kb on + strand at 184.748 kb on - strand at 184.765 kb on + strand at 184.766 kb on - strand at 184.821 kb on + strand at 184.822 kb on - strand at 184.847 kb on - strand at 184.851 kb on - strand at 184.939 kb on + strand, within CA264_21585 at 184.940 kb on - strand, within CA264_21585 at 185.035 kb on - strand, within CA264_21585 at 185.035 kb on - strand, within CA264_21585 at 185.035 kb on - strand, within CA264_21585 at 185.037 kb on + strand, within CA264_21585 at 185.038 kb on - strand, within CA264_21585 at 185.041 kb on + strand, within CA264_21585 at 185.042 kb on - strand, within CA264_21585 at 185.042 kb on - strand, within CA264_21585 at 185.065 kb on - strand, within CA264_21585 at 185.092 kb on - strand, within CA264_21585 at 185.158 kb on + strand, within CA264_21585 at 185.159 kb on - strand, within CA264_21585 at 185.162 kb on + strand, within CA264_21585 at 185.162 kb on + strand, within CA264_21585 at 185.163 kb on - strand, within CA264_21585 at 185.183 kb on - strand at 185.206 kb on - strand at 185.216 kb on - strand at 185.235 kb on + strand at 185.260 kb on - strand at 185.316 kb on + strand, within CA264_21590 at 185.316 kb on + strand, within CA264_21590 at 185.317 kb on - strand, within CA264_21590 at 185.318 kb on + strand, within CA264_21590 at 185.318 kb on + strand, within CA264_21590 at 185.318 kb on + strand, within CA264_21590 at 185.319 kb on - strand, within CA264_21590 at 185.319 kb on - strand, within CA264_21590 at 185.319 kb on - strand, within CA264_21590 at 185.360 kb on + strand, within CA264_21590 at 185.361 kb on - strand, within CA264_21590 at 185.361 kb on - strand, within CA264_21590 at 185.361 kb on - strand, within CA264_21590 at 185.381 kb on - strand, within CA264_21590 at 185.451 kb on - strand, within CA264_21590 at 185.454 kb on + strand, within CA264_21590 at 185.505 kb on + strand, within CA264_21590 at 185.505 kb on + strand, within CA264_21590 at 185.506 kb on - strand, within CA264_21590 at 185.584 kb on + strand, within CA264_21590 at 185.585 kb on - strand, within CA264_21590 at 185.623 kb on + strand at 185.624 kb on - strand at 185.624 kb on - strand at 185.649 kb on - strand at 185.649 kb on - strand at 185.649 kb on - strand at 185.765 kb on + strand at 185.837 kb on + strand at 185.838 kb on - strand at 185.838 kb on - strand at 185.838 kb on - strand at 185.851 kb on - strand at 185.928 kb on + strand at 185.928 kb on + strand at 185.928 kb on + strand at 185.928 kb on + strand at 185.983 kb on - strand, within CA264_21595 at 186.009 kb on + strand, within CA264_21595 at 186.009 kb on + strand, within CA264_21595 at 186.009 kb on + strand, within CA264_21595 at 186.009 kb on + strand, within CA264_21595 at 186.010 kb on - strand, within CA264_21595 at 186.010 kb on - strand, within CA264_21595 at 186.010 kb on - strand, within CA264_21595 at 186.011 kb on + strand, within CA264_21595 at 186.011 kb on + strand, within CA264_21595 at 186.011 kb on + strand, within CA264_21595 at 186.011 kb on + strand, within CA264_21595 at 186.027 kb on + strand, within CA264_21595 at 186.067 kb on - strand, within CA264_21595 at 186.114 kb on - strand, within CA264_21595 at 186.129 kb on + strand, within CA264_21595 at 186.129 kb on + strand, within CA264_21595 at 186.134 kb on + strand, within CA264_21595 at 186.138 kb on + strand, within CA264_21595 at 186.170 kb on + strand, within CA264_21595 at 186.170 kb on + strand, within CA264_21595 at 186.171 kb on - strand, within CA264_21595 at 186.181 kb on + strand, within CA264_21595 at 186.186 kb on + strand, within CA264_21595 at 186.231 kb on + strand, within CA264_21595 at 186.302 kb on + strand, within CA264_21595 at 186.330 kb on + strand, within CA264_21595 at 186.355 kb on - strand, within CA264_21595 at 186.404 kb on + strand, within CA264_21595 at 186.454 kb on + strand, within CA264_21595 at 186.455 kb on - strand, within CA264_21595 at 186.477 kb on - strand, within CA264_21595 at 186.729 kb on - strand, within CA264_21595 at 186.732 kb on + strand, within CA264_21595 at 186.733 kb on - strand, within CA264_21595 at 186.841 kb on - strand, within CA264_21595 at 186.841 kb on - strand, within CA264_21595 at 186.925 kb on - strand, within CA264_21595 at 187.221 kb on + strand, within CA264_21595 at 187.222 kb on - strand, within CA264_21595 at 187.258 kb on - strand, within CA264_21595 at 187.286 kb on - strand, within CA264_21595 at 187.373 kb on - strand, within CA264_21595 at 187.382 kb on - strand, within CA264_21595 at 187.462 kb on - strand, within CA264_21595 at 187.535 kb on - strand, within CA264_21595 at 187.535 kb on - strand, within CA264_21595 at 187.551 kb on + strand, within CA264_21595 at 187.551 kb on + strand, within CA264_21595 at 187.552 kb on - strand, within CA264_21595 at 187.553 kb on + strand, within CA264_21595 at 187.562 kb on + strand, within CA264_21595 at 187.601 kb on + strand, within CA264_21595 at 187.604 kb on + strand, within CA264_21595 at 187.604 kb on + strand, within CA264_21595 at 187.605 kb on - strand, within CA264_21595 at 187.605 kb on - strand, within CA264_21595 at 187.605 kb on - strand, within CA264_21595 at 187.606 kb on + strand, within CA264_21595 at 187.607 kb on - strand, within CA264_21595 at 187.607 kb on - strand, within CA264_21595 at 187.607 kb on - strand, within CA264_21595 at 187.617 kb on + strand, within CA264_21595 at 187.678 kb on + strand, within CA264_21595 at 187.679 kb on - strand, within CA264_21595 at 187.682 kb on - strand, within CA264_21595 at 187.686 kb on + strand, within CA264_21595 at 187.721 kb on + strand, within CA264_21595 at 187.722 kb on - strand, within CA264_21595 at 187.761 kb on + strand, within CA264_21595 at 187.772 kb on + strand, within CA264_21595 at 187.772 kb on + strand, within CA264_21595 at 187.772 kb on + strand, within CA264_21595 at 187.773 kb on - strand, within CA264_21595 at 187.812 kb on - strand, within CA264_21595 at 187.812 kb on - strand, within CA264_21595 at 187.812 kb on - strand, within CA264_21595 at 187.853 kb on + strand, within CA264_21595 at 187.893 kb on - strand, within CA264_21595 at 187.898 kb on + strand, within CA264_21595 at 187.928 kb on + strand, within CA264_21595 at 187.933 kb on - strand, within CA264_21595 at 187.963 kb on - strand, within CA264_21595 at 187.970 kb on + strand, within CA264_21595 at 187.985 kb on + strand, within CA264_21595 at 187.986 kb on - strand, within CA264_21595 at 188.164 kb on - strand at 188.164 kb on - strand at 188.167 kb on - strand at 188.167 kb on - strand at 188.172 kb on + strand at 188.175 kb on - strand at 188.185 kb on - strand at 188.227 kb on + strand at 188.228 kb on - strand at 188.228 kb on - strand at 188.265 kb on + strand at 188.266 kb on - strand at 188.275 kb on - strand at 188.284 kb on - strand at 188.300 kb on - strand at 188.304 kb on + strand at 188.360 kb on - strand at 188.435 kb on + strand at 188.492 kb on - strand at 188.492 kb on - strand at 188.492 kb on - strand at 188.494 kb on - strand at 188.517 kb on + strand at 188.522 kb on - strand at 188.522 kb on - strand at 188.523 kb on + strand at 188.523 kb on + strand at 188.523 kb on + strand at 188.524 kb on - strand at 188.524 kb on - strand at 188.524 kb on - strand at 188.533 kb on + strand at 188.540 kb on - strand at 188.544 kb on + strand at 188.544 kb on + strand at 188.544 kb on + strand at 188.547 kb on + strand at 188.559 kb on + strand at 188.560 kb on - strand at 188.571 kb on - strand at 188.571 kb on - strand at 188.573 kb on + strand at 188.603 kb on + strand at 188.603 kb on + strand at 188.608 kb on + strand at 188.630 kb on + strand at 188.630 kb on + strand at 188.635 kb on + strand at 188.635 kb on + strand at 188.645 kb on - strand at 188.645 kb on - strand at 188.649 kb on + strand at 188.649 kb on + strand at 188.650 kb on - strand at 188.653 kb on + strand at 188.654 kb on - strand at 188.654 kb on - strand at 188.654 kb on - strand at 188.679 kb on + strand at 188.741 kb on - strand, within CA264_21600 at 188.796 kb on - strand, within CA264_21600 at 188.832 kb on + strand, within CA264_21600 at 188.833 kb on - strand, within CA264_21600 at 188.838 kb on - strand, within CA264_21600 at 188.842 kb on + strand, within CA264_21600 at 188.843 kb on - strand, within CA264_21600 at 188.902 kb on + strand, within CA264_21600 at 188.902 kb on + strand, within CA264_21600 at 188.927 kb on - strand, within CA264_21600 at 188.986 kb on + strand at 188.986 kb on + strand at 188.987 kb on + strand at 188.992 kb on + strand at 188.993 kb on - strand at 189.003 kb on + strand at 189.019 kb on - strand at 189.020 kb on + strand at 189.031 kb on + strand at 189.068 kb on + strand at 189.071 kb on - strand at 189.072 kb on + strand at 189.196 kb on + strand at 189.198 kb on + strand at 189.198 kb on + strand at 189.199 kb on - strand at 189.199 kb on - strand at 189.217 kb on - strand at 189.235 kb on + strand at 189.236 kb on - strand at 189.240 kb on + strand at 189.251 kb on + strand at 189.251 kb on + strand at 189.252 kb on - strand at 189.252 kb on - strand at 189.252 kb on - strand at 189.252 kb on - strand at 189.253 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM remove 184,747 + -0.1 184,748 - -0.9 184,765 + +0.1 184,766 - +0.4 184,821 + -0.0 184,822 - -0.4 184,847 - -0.6 184,851 - +0.7 184,939 + CA264_21585 0.19 -0.3 184,940 - CA264_21585 0.19 -0.2 185,035 - CA264_21585 0.48 -0.4 185,035 - CA264_21585 0.48 +1.7 185,035 - CA264_21585 0.48 +0.0 185,037 + CA264_21585 0.49 -0.4 185,038 - CA264_21585 0.49 -0.3 185,041 + CA264_21585 0.50 +0.0 185,042 - CA264_21585 0.50 +0.2 185,042 - CA264_21585 0.50 +2.6 185,065 - CA264_21585 0.57 -0.4 185,092 - CA264_21585 0.65 +2.2 185,158 + CA264_21585 0.85 -0.2 185,159 - CA264_21585 0.86 -0.1 185,162 + CA264_21585 0.87 +0.8 185,162 + CA264_21585 0.87 -0.3 185,163 - CA264_21585 0.87 -0.1 185,183 - -0.2 185,206 - +1.2 185,216 - +0.3 185,235 + +0.6 185,260 - -0.9 185,316 + CA264_21590 0.16 -0.3 185,316 + CA264_21590 0.16 -0.5 185,317 - CA264_21590 0.16 +0.3 185,318 + CA264_21590 0.16 +0.1 185,318 + CA264_21590 0.16 -0.1 185,318 + CA264_21590 0.16 -1.3 185,319 - CA264_21590 0.17 +1.2 185,319 - CA264_21590 0.17 +0.4 185,319 - CA264_21590 0.17 +0.6 185,360 + CA264_21590 0.27 -0.4 185,361 - CA264_21590 0.27 -0.2 185,361 - CA264_21590 0.27 +0.7 185,361 - CA264_21590 0.27 -0.0 185,381 - CA264_21590 0.33 +0.1 185,451 - CA264_21590 0.51 +0.2 185,454 + CA264_21590 0.51 -0.3 185,505 + CA264_21590 0.64 +0.1 185,505 + CA264_21590 0.64 +0.8 185,506 - CA264_21590 0.65 -0.5 185,584 + CA264_21590 0.85 +0.4 185,585 - CA264_21590 0.85 -1.3 185,623 + +1.4 185,624 - -0.4 185,624 - +0.2 185,649 - -1.6 185,649 - +0.4 185,649 - +0.3 185,765 + -1.3 185,837 + +0.8 185,838 - -0.7 185,838 - -1.1 185,838 - -0.8 185,851 - -0.4 185,928 + -1.3 185,928 + +0.8 185,928 + +0.4 185,928 + +0.3 185,983 - CA264_21595 0.10 +0.0 186,009 + CA264_21595 0.11 +0.4 186,009 + CA264_21595 0.11 -0.8 186,009 + CA264_21595 0.11 -0.1 186,009 + CA264_21595 0.11 -0.7 186,010 - CA264_21595 0.11 +0.6 186,010 - CA264_21595 0.11 +0.5 186,010 - CA264_21595 0.11 -1.2 186,011 + CA264_21595 0.11 +0.8 186,011 + CA264_21595 0.11 -0.2 186,011 + CA264_21595 0.11 -0.2 186,011 + CA264_21595 0.11 -0.4 186,027 + CA264_21595 0.12 +1.4 186,067 - CA264_21595 0.14 -0.5 186,114 - CA264_21595 0.15 +0.7 186,129 + CA264_21595 0.16 -0.1 186,129 + CA264_21595 0.16 -0.5 186,134 + CA264_21595 0.16 -0.3 186,138 + CA264_21595 0.16 -0.6 186,170 + CA264_21595 0.18 +0.3 186,170 + CA264_21595 0.18 +0.5 186,171 - CA264_21595 0.18 +0.6 186,181 + CA264_21595 0.18 +0.4 186,186 + CA264_21595 0.18 +0.4 186,231 + CA264_21595 0.20 -0.0 186,302 + CA264_21595 0.23 -0.6 186,330 + CA264_21595 0.24 -0.9 186,355 - CA264_21595 0.25 -0.5 186,404 + CA264_21595 0.27 -0.4 186,454 + CA264_21595 0.29 +0.3 186,455 - CA264_21595 0.29 -0.1 186,477 - CA264_21595 0.30 +0.1 186,729 - CA264_21595 0.39 +0.9 186,732 + CA264_21595 0.39 +1.2 186,733 - CA264_21595 0.40 -0.6 186,841 - CA264_21595 0.44 +0.2 186,841 - CA264_21595 0.44 -1.0 186,925 - CA264_21595 0.47 +0.2 187,221 + CA264_21595 0.59 +1.1 187,222 - CA264_21595 0.59 +0.4 187,258 - CA264_21595 0.60 -0.3 187,286 - CA264_21595 0.61 -0.7 187,373 - CA264_21595 0.64 -0.2 187,382 - CA264_21595 0.65 -0.2 187,462 - CA264_21595 0.68 -0.1 187,535 - CA264_21595 0.71 +0.2 187,535 - CA264_21595 0.71 -0.2 187,551 + CA264_21595 0.71 +0.6 187,551 + CA264_21595 0.71 -0.0 187,552 - CA264_21595 0.71 +0.3 187,553 + CA264_21595 0.72 -0.3 187,562 + CA264_21595 0.72 -1.8 187,601 + CA264_21595 0.73 -0.1 187,604 + CA264_21595 0.73 -0.6 187,604 + CA264_21595 0.73 -2.3 187,605 - CA264_21595 0.74 +1.2 187,605 - CA264_21595 0.74 -0.3 187,605 - CA264_21595 0.74 -0.2 187,606 + CA264_21595 0.74 +0.7 187,607 - CA264_21595 0.74 -0.3 187,607 - CA264_21595 0.74 -0.4 187,607 - CA264_21595 0.74 +0.6 187,617 + CA264_21595 0.74 -0.1 187,678 + CA264_21595 0.76 +0.4 187,679 - CA264_21595 0.76 -0.3 187,682 - CA264_21595 0.77 -0.6 187,686 + CA264_21595 0.77 +0.0 187,721 + CA264_21595 0.78 -0.3 187,722 - CA264_21595 0.78 -0.3 187,761 + CA264_21595 0.80 -0.3 187,772 + CA264_21595 0.80 -0.4 187,772 + CA264_21595 0.80 -0.1 187,772 + CA264_21595 0.80 -0.2 187,773 - CA264_21595 0.80 -0.5 187,812 - CA264_21595 0.82 +0.2 187,812 - CA264_21595 0.82 +0.5 187,812 - CA264_21595 0.82 +1.4 187,853 + CA264_21595 0.83 +0.2 187,893 - CA264_21595 0.85 -0.8 187,898 + CA264_21595 0.85 +0.3 187,928 + CA264_21595 0.86 +0.8 187,933 - CA264_21595 0.86 -0.4 187,963 - CA264_21595 0.87 -1.4 187,970 + CA264_21595 0.88 -0.2 187,985 + CA264_21595 0.88 +1.2 187,986 - CA264_21595 0.88 -0.9 188,164 - -0.2 188,164 - +1.2 188,167 - +0.4 188,167 - -0.3 188,172 + -0.6 188,175 - +0.8 188,185 - +0.2 188,227 + -0.3 188,228 - -0.2 188,228 - -0.7 188,265 + -0.6 188,266 - -0.5 188,275 - -0.3 188,284 - -0.3 188,300 - +0.6 188,304 + -0.0 188,360 - -0.1 188,435 + -0.2 188,492 - -0.7 188,492 - -0.4 188,492 - -0.4 188,494 - +0.2 188,517 + -0.3 188,522 - +1.0 188,522 - -0.2 188,523 + -0.2 188,523 + -0.2 188,523 + -1.8 188,524 - -0.3 188,524 - +0.3 188,524 - -1.0 188,533 + -0.6 188,540 - +0.5 188,544 + +0.2 188,544 + +0.8 188,544 + +0.5 188,547 + -0.2 188,559 + -0.0 188,560 - +0.4 188,571 - -0.4 188,571 - +0.3 188,573 + +0.4 188,603 + -0.3 188,603 + -0.7 188,608 + +1.4 188,630 + +0.0 188,630 + +0.8 188,635 + -0.4 188,635 + -0.3 188,645 - -1.0 188,645 - +1.9 188,649 + -0.8 188,649 + -1.3 188,650 - -1.6 188,653 + -0.5 188,654 - +0.8 188,654 - -0.2 188,654 - -0.7 188,679 + +0.6 188,741 - CA264_21600 0.24 -0.3 188,796 - CA264_21600 0.41 -0.2 188,832 + CA264_21600 0.52 +0.5 188,833 - CA264_21600 0.52 +0.4 188,838 - CA264_21600 0.54 +0.0 188,842 + CA264_21600 0.55 +0.3 188,843 - CA264_21600 0.56 -1.1 188,902 + CA264_21600 0.74 -0.4 188,902 + CA264_21600 0.74 +0.2 188,927 - CA264_21600 0.81 -0.1 188,986 + -0.4 188,986 + -0.4 188,987 + -0.8 188,992 + -0.1 188,993 - -0.2 189,003 + -0.7 189,019 - -0.6 189,020 + -0.2 189,031 + -0.5 189,068 + +0.0 189,071 - +0.2 189,072 + +1.2 189,196 + -0.0 189,198 + -0.4 189,198 + -0.4 189,199 - +0.8 189,199 - -0.2 189,217 - -0.0 189,235 + -0.2 189,236 - -0.2 189,240 + -0.2 189,251 + +0.1 189,251 + +0.2 189,252 - -0.7 189,252 - -0.0 189,252 - +0.1 189,252 - -1.6 189,253 + -0.0
Or see this region's nucleotide sequence