Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21000

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20990 and CA264_20995 overlap by 26 nucleotidesCA264_20995 and CA264_21000 are separated by 39 nucleotidesCA264_21000 and CA264_21005 are separated by 4 nucleotides CA264_20990: CA264_20990 - conjugal transfer protein TraG, at 59,471 to 61,915 _20990 CA264_20995: CA264_20995 - plasmid transfer protein, at 61,890 to 62,561 _20995 CA264_21000: CA264_21000 - hypothetical protein, at 62,601 to 63,200 _21000 CA264_21005: CA264_21005 - plasmid transfer protein, at 63,205 to 64,200 _21005 Position (kb) 62 63 64Strain fitness (log2 ratio) -2 -1 0 1 2at 61.673 kb on + strandat 61.674 kb on - strandat 61.704 kb on - strandat 61.777 kb on - strandat 61.777 kb on - strandat 61.777 kb on - strandat 61.854 kb on + strandat 61.855 kb on - strandat 61.913 kb on + strandat 61.914 kb on - strandat 61.942 kb on + strandat 61.942 kb on + strandat 61.946 kb on - strandat 62.031 kb on - strand, within CA264_20995at 62.066 kb on + strand, within CA264_20995at 62.067 kb on - strand, within CA264_20995at 62.069 kb on + strand, within CA264_20995at 62.069 kb on + strand, within CA264_20995at 62.069 kb on + strand, within CA264_20995at 62.070 kb on - strand, within CA264_20995at 62.169 kb on + strand, within CA264_20995at 62.169 kb on + strand, within CA264_20995at 62.169 kb on + strand, within CA264_20995at 62.170 kb on - strand, within CA264_20995at 62.194 kb on + strand, within CA264_20995at 62.194 kb on + strand, within CA264_20995at 62.195 kb on - strand, within CA264_20995at 62.195 kb on - strand, within CA264_20995at 62.202 kb on + strand, within CA264_20995at 62.288 kb on + strand, within CA264_20995at 62.303 kb on + strand, within CA264_20995at 62.304 kb on - strand, within CA264_20995at 62.307 kb on + strandat 62.308 kb on - strand, within CA264_20995at 62.308 kb on - strand, within CA264_20995at 62.422 kb on - strand, within CA264_20995at 62.542 kb on - strandat 62.542 kb on - strandat 62.564 kb on + strandat 62.576 kb on + strandat 62.588 kb on - strandat 62.588 kb on - strandat 62.593 kb on + strandat 62.623 kb on + strandat 62.683 kb on - strand, within CA264_21000at 62.683 kb on - strand, within CA264_21000at 62.683 kb on - strand, within CA264_21000at 62.742 kb on - strand, within CA264_21000at 62.760 kb on + strand, within CA264_21000at 62.784 kb on - strand, within CA264_21000at 62.805 kb on - strand, within CA264_21000at 62.805 kb on - strand, within CA264_21000at 62.861 kb on - strand, within CA264_21000at 62.869 kb on + strand, within CA264_21000at 62.870 kb on - strand, within CA264_21000at 62.870 kb on - strand, within CA264_21000at 62.871 kb on + strand, within CA264_21000at 62.931 kb on + strand, within CA264_21000at 63.015 kb on - strand, within CA264_21000at 63.060 kb on - strand, within CA264_21000at 63.066 kb on - strand, within CA264_21000at 63.066 kb on - strand, within CA264_21000at 63.078 kb on + strand, within CA264_21000at 63.117 kb on + strand, within CA264_21000at 63.117 kb on + strand, within CA264_21000at 63.117 kb on + strand, within CA264_21000at 63.118 kb on - strand, within CA264_21000at 63.118 kb on - strand, within CA264_21000at 63.131 kb on + strand, within CA264_21000at 63.222 kb on + strandat 63.222 kb on + strandat 63.222 kb on + strandat 63.222 kb on + strandat 63.223 kb on - strandat 63.263 kb on + strandat 63.263 kb on + strandat 63.264 kb on - strandat 63.264 kb on - strandat 63.264 kb on - strandat 63.329 kb on - strand, within CA264_21005at 63.347 kb on - strand, within CA264_21005at 63.347 kb on - strand, within CA264_21005at 63.439 kb on - strand, within CA264_21005at 63.493 kb on + strand, within CA264_21005at 63.494 kb on - strand, within CA264_21005at 63.506 kb on + strand, within CA264_21005at 63.680 kb on - strand, within CA264_21005at 63.682 kb on + strand, within CA264_21005at 63.728 kb on + strand, within CA264_21005at 63.728 kb on + strand, within CA264_21005at 63.766 kb on + strand, within CA264_21005at 63.766 kb on + strand, within CA264_21005at 63.767 kb on - strand, within CA264_21005at 63.767 kb on - strand, within CA264_21005at 63.767 kb on - strand, within CA264_21005at 63.772 kb on - strand, within CA264_21005at 63.772 kb on - strand, within CA264_21005at 63.775 kb on + strand, within CA264_21005at 63.837 kb on + strand, within CA264_21005at 63.920 kb on - strand, within CA264_21005at 63.927 kb on + strand, within CA264_21005at 63.927 kb on + strand, within CA264_21005at 63.927 kb on + strand, within CA264_21005at 63.928 kb on - strand, within CA264_21005at 63.928 kb on - strand, within CA264_21005at 63.928 kb on - strand, within CA264_21005at 63.928 kb on - strand, within CA264_21005at 63.955 kb on + strand, within CA264_21005at 63.975 kb on - strand, within CA264_21005at 64.015 kb on - strand, within CA264_21005at 64.015 kb on - strand, within CA264_21005at 64.054 kb on + strand, within CA264_21005at 64.140 kb on + strandat 64.140 kb on + strandat 64.141 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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61,673 + +0.8
61,674 - +0.2
61,704 - -1.2
61,777 - +0.1
61,777 - +0.2
61,777 - -0.8
61,854 + +0.1
61,855 - -0.5
61,913 + +0.4
61,914 - -2.2
61,942 + -0.2
61,942 + -0.0
61,946 - +0.3
62,031 - CA264_20995 0.21 -0.0
62,066 + CA264_20995 0.26 +0.3
62,067 - CA264_20995 0.26 -0.5
62,069 + CA264_20995 0.27 -1.0
62,069 + CA264_20995 0.27 +0.3
62,069 + CA264_20995 0.27 +0.2
62,070 - CA264_20995 0.27 -1.1
62,169 + CA264_20995 0.42 -0.2
62,169 + CA264_20995 0.42 -0.1
62,169 + CA264_20995 0.42 +0.1
62,170 - CA264_20995 0.42 +0.7
62,194 + CA264_20995 0.45 +0.5
62,194 + CA264_20995 0.45 +0.0
62,195 - CA264_20995 0.45 -0.4
62,195 - CA264_20995 0.45 +0.4
62,202 + CA264_20995 0.46 +0.4
62,288 + CA264_20995 0.59 +0.1
62,303 + CA264_20995 0.61 -0.1
62,304 - CA264_20995 0.62 +0.3
62,307 + -0.2
62,308 - CA264_20995 0.62 -0.0
62,308 - CA264_20995 0.62 -0.5
62,422 - CA264_20995 0.79 +0.3
62,542 - +1.1
62,542 - +0.7
62,564 + -0.8
62,576 + +0.1
62,588 - +0.6
62,588 - +0.1
62,593 + -0.2
62,623 + +0.2
62,683 - CA264_21000 0.14 -0.1
62,683 - CA264_21000 0.14 +0.4
62,683 - CA264_21000 0.14 -0.2
62,742 - CA264_21000 0.23 -1.3
62,760 + CA264_21000 0.27 +0.1
62,784 - CA264_21000 0.30 +0.0
62,805 - CA264_21000 0.34 +0.8
62,805 - CA264_21000 0.34 -0.6
62,861 - CA264_21000 0.43 +0.2
62,869 + CA264_21000 0.45 -0.0
62,870 - CA264_21000 0.45 +1.7
62,870 - CA264_21000 0.45 -0.1
62,871 + CA264_21000 0.45 +0.2
62,931 + CA264_21000 0.55 +0.6
63,015 - CA264_21000 0.69 -0.7
63,060 - CA264_21000 0.77 +0.6
63,066 - CA264_21000 0.78 -0.8
63,066 - CA264_21000 0.78 -0.0
63,078 + CA264_21000 0.80 +0.3
63,117 + CA264_21000 0.86 -0.3
63,117 + CA264_21000 0.86 -0.7
63,117 + CA264_21000 0.86 -0.2
63,118 - CA264_21000 0.86 +1.2
63,118 - CA264_21000 0.86 -0.4
63,131 + CA264_21000 0.88 +0.2
63,222 + +0.2
63,222 + -0.0
63,222 + -1.3
63,222 + +1.0
63,223 - +0.0
63,263 + -0.4
63,263 + +0.2
63,264 - -0.9
63,264 - +0.5
63,264 - +0.1
63,329 - CA264_21005 0.12 +0.4
63,347 - CA264_21005 0.14 -0.5
63,347 - CA264_21005 0.14 +2.6
63,439 - CA264_21005 0.23 -0.0
63,493 + CA264_21005 0.29 -1.2
63,494 - CA264_21005 0.29 -0.0
63,506 + CA264_21005 0.30 -2.0
63,680 - CA264_21005 0.48 +1.4
63,682 + CA264_21005 0.48 +0.4
63,728 + CA264_21005 0.53 -0.5
63,728 + CA264_21005 0.53 +0.9
63,766 + CA264_21005 0.56 -0.2
63,766 + CA264_21005 0.56 -0.6
63,767 - CA264_21005 0.56 -0.0
63,767 - CA264_21005 0.56 +0.1
63,767 - CA264_21005 0.56 +0.3
63,772 - CA264_21005 0.57 -0.1
63,772 - CA264_21005 0.57 +0.4
63,775 + CA264_21005 0.57 -0.3
63,837 + CA264_21005 0.63 -0.1
63,920 - CA264_21005 0.72 -0.0
63,927 + CA264_21005 0.72 -0.8
63,927 + CA264_21005 0.72 +0.7
63,927 + CA264_21005 0.72 +0.1
63,928 - CA264_21005 0.73 +0.1
63,928 - CA264_21005 0.73 +1.5
63,928 - CA264_21005 0.73 +0.2
63,928 - CA264_21005 0.73 -0.7
63,955 + CA264_21005 0.75 +0.2
63,975 - CA264_21005 0.77 +0.0
64,015 - CA264_21005 0.81 +0.1
64,015 - CA264_21005 0.81 +0.3
64,054 + CA264_21005 0.85 +0.8
64,140 + +0.7
64,140 + -0.4
64,141 - -0.3

Or see this region's nucleotide sequence