Experiment: m.b. nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01515 and CA264_01520 are separated by 272 nucleotides CA264_01520 and CA264_01525 are separated by 372 nucleotides
CA264_01515: CA264_01515 - hypothetical protein, at 357,422 to 358,621
_01515
CA264_01520: CA264_01520 - adenylosuccinate lyase, at 358,894 to 360,246
_01520
CA264_01525: CA264_01525 - penicillin-binding protein, at 360,619 to 362,601
_01525
Position (kb) 358
359
360
361 Strain fitness (log2 ratio) -2
-1
0
1
2 at 357.944 kb on + strand, within CA264_01515 at 357.975 kb on + strand, within CA264_01515 at 357.975 kb on + strand, within CA264_01515 at 358.030 kb on + strand, within CA264_01515 at 358.153 kb on + strand, within CA264_01515 at 358.154 kb on - strand, within CA264_01515 at 358.202 kb on - strand, within CA264_01515 at 358.319 kb on - strand, within CA264_01515 at 358.441 kb on + strand, within CA264_01515 at 358.441 kb on + strand, within CA264_01515 at 358.442 kb on - strand, within CA264_01515 at 358.463 kb on + strand, within CA264_01515 at 358.463 kb on + strand, within CA264_01515 at 358.463 kb on + strand, within CA264_01515 at 358.464 kb on - strand, within CA264_01515 at 358.483 kb on + strand, within CA264_01515 at 358.490 kb on - strand, within CA264_01515 at 358.607 kb on - strand at 358.640 kb on + strand at 358.694 kb on + strand at 358.694 kb on + strand at 358.695 kb on - strand at 358.702 kb on - strand at 358.796 kb on + strand at 358.864 kb on + strand at 358.867 kb on - strand at 358.879 kb on - strand at 358.892 kb on - strand at 358.895 kb on + strand at 360.249 kb on + strand at 360.277 kb on + strand at 360.295 kb on + strand at 360.295 kb on + strand at 360.380 kb on + strand at 360.412 kb on - strand at 360.430 kb on + strand at 360.459 kb on + strand at 360.459 kb on + strand at 360.460 kb on - strand at 360.464 kb on + strand at 360.464 kb on + strand at 360.465 kb on - strand at 360.465 kb on - strand at 360.465 kb on - strand at 360.467 kb on - strand at 360.467 kb on - strand at 360.467 kb on - strand at 360.484 kb on + strand at 360.485 kb on - strand at 360.485 kb on - strand at 360.494 kb on - strand at 360.494 kb on - strand at 360.496 kb on - strand at 360.496 kb on - strand at 360.497 kb on + strand at 360.497 kb on + strand at 360.497 kb on + strand at 360.498 kb on - strand at 360.500 kb on + strand at 360.501 kb on - strand at 360.507 kb on + strand at 360.527 kb on + strand at 360.527 kb on + strand at 360.527 kb on + strand at 360.527 kb on + strand at 360.528 kb on - strand at 360.528 kb on - strand at 360.530 kb on - strand at 360.534 kb on + strand at 360.534 kb on + strand at 360.534 kb on + strand at 360.534 kb on + strand at 360.534 kb on + strand at 360.535 kb on - strand at 360.536 kb on + strand at 360.537 kb on - strand at 360.552 kb on - strand at 360.566 kb on + strand at 360.566 kb on + strand at 360.570 kb on + strand at 360.580 kb on - strand at 360.586 kb on + strand at 360.587 kb on - strand at 360.601 kb on + strand at 360.603 kb on + strand at 360.690 kb on + strand at 360.690 kb on + strand at 360.691 kb on - strand at 360.691 kb on - strand at 360.715 kb on + strand at 360.715 kb on + strand at 360.716 kb on - strand at 360.717 kb on + strand at 360.717 kb on + strand at 360.717 kb on + strand at 360.718 kb on - strand at 360.729 kb on + strand at 360.754 kb on + strand at 360.869 kb on + strand, within CA264_01525 at 360.869 kb on + strand, within CA264_01525 at 360.870 kb on - strand, within CA264_01525 at 360.870 kb on - strand, within CA264_01525 at 360.870 kb on - strand, within CA264_01525 at 360.870 kb on - strand, within CA264_01525 at 360.870 kb on - strand, within CA264_01525 at 360.871 kb on + strand, within CA264_01525 at 361.129 kb on + strand, within CA264_01525 at 361.205 kb on + strand, within CA264_01525 at 361.207 kb on + strand, within CA264_01525
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM remove 357,944 + CA264_01515 0.43 +0.1 357,975 + CA264_01515 0.46 -0.3 357,975 + CA264_01515 0.46 +1.3 358,030 + CA264_01515 0.51 -0.0 358,153 + CA264_01515 0.61 -0.2 358,154 - CA264_01515 0.61 -0.6 358,202 - CA264_01515 0.65 +1.1 358,319 - CA264_01515 0.75 -0.1 358,441 + CA264_01515 0.85 +0.1 358,441 + CA264_01515 0.85 +0.1 358,442 - CA264_01515 0.85 +0.8 358,463 + CA264_01515 0.87 -0.2 358,463 + CA264_01515 0.87 -1.1 358,463 + CA264_01515 0.87 +0.4 358,464 - CA264_01515 0.87 +0.3 358,483 + CA264_01515 0.88 -0.4 358,490 - CA264_01515 0.89 -0.2 358,607 - -0.6 358,640 + -0.9 358,694 + +0.1 358,694 + -0.6 358,695 - -0.9 358,702 - -0.6 358,796 + -1.1 358,864 + -1.1 358,867 - -1.2 358,879 - -1.8 358,892 - -0.3 358,895 + -0.5 360,249 + -0.1 360,277 + -0.0 360,295 + -0.2 360,295 + -1.1 360,380 + -0.9 360,412 - -0.5 360,430 + +0.4 360,459 + -1.6 360,459 + -1.4 360,460 - +0.3 360,464 + -0.7 360,464 + -0.1 360,465 - -0.9 360,465 - +0.1 360,465 - -0.3 360,467 - +0.9 360,467 - -0.4 360,467 - -0.2 360,484 + +0.5 360,485 - -0.9 360,485 - +1.5 360,494 - +1.6 360,494 - +0.8 360,496 - +2.4 360,496 - +0.2 360,497 + -0.1 360,497 + +0.2 360,497 + -0.2 360,498 - -0.5 360,500 + +0.6 360,501 - -0.0 360,507 + -1.8 360,527 + +0.5 360,527 + -0.1 360,527 + +1.2 360,527 + -0.3 360,528 - +0.7 360,528 - +1.2 360,530 - +0.5 360,534 + -0.6 360,534 + -1.2 360,534 + +1.8 360,534 + +0.4 360,534 + -0.4 360,535 - -0.1 360,536 + +0.6 360,537 - -0.8 360,552 - -0.8 360,566 + -0.7 360,566 + -0.3 360,570 + -0.2 360,580 - -0.3 360,586 + +0.4 360,587 - +0.5 360,601 + +0.1 360,603 + -0.2 360,690 + +0.5 360,690 + +0.8 360,691 - +0.4 360,691 - -1.0 360,715 + +0.2 360,715 + -0.5 360,716 - -0.2 360,717 + -0.1 360,717 + -0.4 360,717 + -1.2 360,718 - -0.5 360,729 + -0.2 360,754 + +0.1 360,869 + CA264_01525 0.13 -0.4 360,869 + CA264_01525 0.13 +0.0 360,870 - CA264_01525 0.13 -0.7 360,870 - CA264_01525 0.13 -0.0 360,870 - CA264_01525 0.13 -0.7 360,870 - CA264_01525 0.13 -0.3 360,870 - CA264_01525 0.13 -0.3 360,871 + CA264_01525 0.13 -0.1 361,129 + CA264_01525 0.26 +2.4 361,205 + CA264_01525 0.30 +0.3 361,207 + CA264_01525 0.30 +1.2
Or see this region's nucleotide sequence