Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01495

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01485 and CA264_01490 are separated by 29 nucleotidesCA264_01490 and CA264_01495 are separated by 3 nucleotidesCA264_01495 and CA264_01500 overlap by 1 nucleotides CA264_01485: CA264_01485 - hypothetical protein, at 353,000 to 353,479 _01485 CA264_01490: CA264_01490 - DUF4199 domain-containing protein, at 353,509 to 354,027 _01490 CA264_01495: CA264_01495 - glycosyltransferase, at 354,031 to 355,005 _01495 CA264_01500: CA264_01500 - glycosyl transferase family 1, at 355,005 to 356,153 _01500 Position (kb) 354 355 356Strain fitness (log2 ratio) -1 0 1 2at 353.041 kb on - strandat 353.067 kb on - strand, within CA264_01485at 353.100 kb on - strand, within CA264_01485at 353.141 kb on + strand, within CA264_01485at 353.143 kb on + strand, within CA264_01485at 353.150 kb on + strand, within CA264_01485at 353.250 kb on + strand, within CA264_01485at 353.273 kb on - strand, within CA264_01485at 353.331 kb on + strand, within CA264_01485at 353.395 kb on + strand, within CA264_01485at 353.395 kb on + strand, within CA264_01485at 353.396 kb on - strand, within CA264_01485at 353.464 kb on - strandat 353.477 kb on + strandat 353.477 kb on + strandat 353.540 kb on + strandat 353.541 kb on - strandat 353.547 kb on - strandat 353.592 kb on + strand, within CA264_01490at 353.592 kb on + strand, within CA264_01490at 353.592 kb on + strand, within CA264_01490at 353.592 kb on + strand, within CA264_01490at 353.593 kb on - strand, within CA264_01490at 353.594 kb on + strand, within CA264_01490at 353.594 kb on + strand, within CA264_01490at 353.594 kb on + strand, within CA264_01490at 353.701 kb on + strand, within CA264_01490at 353.702 kb on - strand, within CA264_01490at 353.702 kb on - strand, within CA264_01490at 353.702 kb on - strand, within CA264_01490at 353.707 kb on + strand, within CA264_01490at 353.708 kb on - strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.710 kb on - strand, within CA264_01490at 353.710 kb on - strand, within CA264_01490at 353.782 kb on - strand, within CA264_01490at 353.782 kb on - strand, within CA264_01490at 353.815 kb on + strand, within CA264_01490at 353.963 kb on + strand, within CA264_01490

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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353,041 - +1.2
353,067 - CA264_01485 0.14 +0.2
353,100 - CA264_01485 0.21 +0.4
353,141 + CA264_01485 0.29 -0.1
353,143 + CA264_01485 0.30 +0.5
353,150 + CA264_01485 0.31 -0.7
353,250 + CA264_01485 0.52 +0.8
353,273 - CA264_01485 0.57 +1.2
353,331 + CA264_01485 0.69 +1.8
353,395 + CA264_01485 0.82 +0.2
353,395 + CA264_01485 0.82 +0.6
353,396 - CA264_01485 0.82 -0.1
353,464 - -0.5
353,477 + -0.2
353,477 + +0.9
353,540 + -0.4
353,541 - +0.2
353,547 - +0.0
353,592 + CA264_01490 0.16 -0.4
353,592 + CA264_01490 0.16 -0.2
353,592 + CA264_01490 0.16 -0.3
353,592 + CA264_01490 0.16 -0.1
353,593 - CA264_01490 0.16 -1.0
353,594 + CA264_01490 0.16 -0.1
353,594 + CA264_01490 0.16 +0.1
353,594 + CA264_01490 0.16 +0.7
353,701 + CA264_01490 0.37 +0.4
353,702 - CA264_01490 0.37 -0.6
353,702 - CA264_01490 0.37 -0.5
353,702 - CA264_01490 0.37 +0.8
353,707 + CA264_01490 0.38 -0.1
353,708 - CA264_01490 0.38 +0.1
353,709 + CA264_01490 0.39 +0.4
353,709 + CA264_01490 0.39 -0.1
353,709 + CA264_01490 0.39 -1.1
353,709 + CA264_01490 0.39 +0.1
353,709 + CA264_01490 0.39 -0.8
353,710 - CA264_01490 0.39 -0.6
353,710 - CA264_01490 0.39 +0.3
353,782 - CA264_01490 0.53 +0.1
353,782 - CA264_01490 0.53 +1.4
353,815 + CA264_01490 0.59 -0.2
353,963 + CA264_01490 0.87 +0.9

Or see this region's nucleotide sequence