Experiment: m.b. nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00840 and CA264_00845 are separated by 86 nucleotides CA264_00845 and CA264_00850 are separated by 171 nucleotides CA264_00850 and CA264_00855 are separated by 2 nucleotides
CA264_00840: CA264_00840 - phosphoserine aminotransferase, at 178,942 to 180,003
_00840
CA264_00845: CA264_00845 - type II 3-dehydroquinate dehydratase, at 180,090 to 180,536
_00845
CA264_00850: CA264_00850 - site-specific tyrosine recombinase XerD, at 180,708 to 181,607
_00850
CA264_00855: CA264_00855 - RNA helicase, at 181,610 to 182,752
_00855
Position (kb) 180
181
182 Strain fitness (log2 ratio) -2
-1
0
1 at 180.004 kb on - strand at 180.004 kb on - strand at 180.029 kb on - strand at 180.064 kb on + strand at 180.064 kb on + strand at 180.067 kb on + strand at 180.067 kb on + strand at 180.067 kb on + strand at 180.068 kb on - strand at 180.068 kb on - strand at 180.092 kb on - strand at 180.548 kb on + strand at 180.565 kb on + strand at 180.565 kb on + strand at 180.574 kb on - strand at 180.585 kb on - strand at 180.617 kb on - strand at 180.628 kb on - strand at 180.641 kb on + strand at 180.646 kb on - strand at 180.647 kb on + strand at 180.647 kb on + strand at 180.651 kb on + strand at 180.675 kb on + strand at 180.676 kb on - strand at 180.682 kb on + strand at 180.683 kb on - strand at 180.726 kb on - strand at 180.728 kb on - strand at 181.612 kb on - strand at 181.628 kb on + strand at 181.629 kb on - strand at 181.629 kb on - strand at 181.770 kb on + strand, within CA264_00855 at 181.770 kb on + strand, within CA264_00855 at 181.770 kb on + strand, within CA264_00855 at 181.770 kb on + strand, within CA264_00855 at 181.771 kb on - strand, within CA264_00855 at 181.797 kb on + strand, within CA264_00855 at 181.798 kb on - strand, within CA264_00855 at 182.082 kb on + strand, within CA264_00855 at 182.083 kb on - strand, within CA264_00855 at 182.237 kb on + strand, within CA264_00855 at 182.258 kb on - strand, within CA264_00855 at 182.307 kb on - strand, within CA264_00855 at 182.373 kb on - strand, within CA264_00855 at 182.373 kb on - strand, within CA264_00855 at 182.373 kb on - strand, within CA264_00855 at 182.408 kb on + strand, within CA264_00855 at 182.411 kb on - strand, within CA264_00855 at 182.426 kb on + strand, within CA264_00855 at 182.519 kb on + strand, within CA264_00855 at 182.519 kb on + strand, within CA264_00855 at 182.520 kb on - strand, within CA264_00855 at 182.520 kb on - strand, within CA264_00855 at 182.521 kb on + strand, within CA264_00855 at 182.521 kb on + strand, within CA264_00855 at 182.521 kb on + strand, within CA264_00855 at 182.522 kb on - strand, within CA264_00855 at 182.522 kb on - strand, within CA264_00855 at 182.531 kb on + strand, within CA264_00855 at 182.574 kb on - strand, within CA264_00855 at 182.574 kb on - strand, within CA264_00855
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM remove 180,004 - +0.7 180,004 - -1.5 180,029 - +0.4 180,064 + +0.1 180,064 + +0.8 180,067 + +1.1 180,067 + +1.0 180,067 + +0.2 180,068 - +0.3 180,068 - +1.6 180,092 - +0.1 180,548 + +0.0 180,565 + -0.2 180,565 + +1.0 180,574 - +0.7 180,585 - -0.6 180,617 - -0.9 180,628 - +0.1 180,641 + +0.6 180,646 - +0.4 180,647 + +0.1 180,647 + -0.1 180,651 + +0.0 180,675 + -2.7 180,676 - +0.2 180,682 + +0.2 180,683 - -0.1 180,726 - +0.0 180,728 - +0.5 181,612 - -0.0 181,628 + +0.8 181,629 - -0.1 181,629 - -0.7 181,770 + CA264_00855 0.14 +0.1 181,770 + CA264_00855 0.14 -0.3 181,770 + CA264_00855 0.14 +0.1 181,770 + CA264_00855 0.14 +0.6 181,771 - CA264_00855 0.14 +0.2 181,797 + CA264_00855 0.16 -0.9 181,798 - CA264_00855 0.16 -1.2 182,082 + CA264_00855 0.41 -0.2 182,083 - CA264_00855 0.41 -0.3 182,237 + CA264_00855 0.55 +0.1 182,258 - CA264_00855 0.57 +0.1 182,307 - CA264_00855 0.61 +1.2 182,373 - CA264_00855 0.67 +0.8 182,373 - CA264_00855 0.67 +1.4 182,373 - CA264_00855 0.67 +0.1 182,408 + CA264_00855 0.70 +0.2 182,411 - CA264_00855 0.70 -0.2 182,426 + CA264_00855 0.71 -0.2 182,519 + CA264_00855 0.80 -0.7 182,519 + CA264_00855 0.80 +0.3 182,520 - CA264_00855 0.80 -0.9 182,520 - CA264_00855 0.80 +0.6 182,521 + CA264_00855 0.80 -0.0 182,521 + CA264_00855 0.80 +0.7 182,521 + CA264_00855 0.80 -0.3 182,522 - CA264_00855 0.80 +0.2 182,522 - CA264_00855 0.80 +0.2 182,531 + CA264_00855 0.81 +0.4 182,574 - CA264_00855 0.84 -0.4 182,574 - CA264_00855 0.84 +0.1
Or see this region's nucleotide sequence