Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00480

Experiment: m.b. nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00475 and CA264_00480 are separated by 86 nucleotidesCA264_00480 and CA264_00485 are separated by 31 nucleotides CA264_00475: CA264_00475 - hypothetical protein, at 102,368 to 104,860 _00475 CA264_00480: CA264_00480 - hypothetical protein, at 104,947 to 106,122 _00480 CA264_00485: CA264_00485 - peptidase M4, at 106,154 to 107,341 _00485 Position (kb) 104 105 106 107Strain fitness (log2 ratio) -2 -1 0 1 2at 104.042 kb on + strand, within CA264_00475at 104.070 kb on + strand, within CA264_00475at 104.129 kb on + strand, within CA264_00475at 104.130 kb on - strand, within CA264_00475at 104.180 kb on - strand, within CA264_00475at 104.223 kb on - strand, within CA264_00475at 104.290 kb on + strand, within CA264_00475at 104.325 kb on + strand, within CA264_00475at 104.326 kb on - strand, within CA264_00475at 104.349 kb on + strand, within CA264_00475at 104.349 kb on + strand, within CA264_00475at 104.396 kb on - strand, within CA264_00475at 104.396 kb on - strand, within CA264_00475at 104.401 kb on - strand, within CA264_00475at 104.401 kb on - strand, within CA264_00475at 104.474 kb on + strand, within CA264_00475at 104.474 kb on + strand, within CA264_00475at 104.485 kb on + strand, within CA264_00475at 104.485 kb on + strand, within CA264_00475at 104.489 kb on + strand, within CA264_00475at 104.489 kb on + strand, within CA264_00475at 104.490 kb on - strand, within CA264_00475at 104.490 kb on - strand, within CA264_00475at 104.525 kb on - strand, within CA264_00475at 104.528 kb on + strand, within CA264_00475at 104.529 kb on - strand, within CA264_00475at 104.553 kb on - strand, within CA264_00475at 104.565 kb on + strand, within CA264_00475at 104.572 kb on + strand, within CA264_00475at 104.677 kb on + strandat 104.677 kb on + strandat 104.764 kb on + strandat 104.779 kb on - strandat 104.801 kb on + strandat 104.859 kb on - strandat 104.876 kb on - strandat 104.893 kb on + strandat 104.894 kb on - strandat 104.896 kb on + strandat 104.897 kb on - strandat 104.900 kb on - strandat 104.917 kb on + strandat 104.927 kb on + strandat 104.948 kb on + strandat 104.956 kb on + strandat 105.073 kb on + strand, within CA264_00480at 105.116 kb on + strand, within CA264_00480at 105.116 kb on + strand, within CA264_00480at 105.125 kb on + strand, within CA264_00480at 105.126 kb on - strand, within CA264_00480at 105.219 kb on - strand, within CA264_00480at 105.219 kb on - strand, within CA264_00480at 105.223 kb on + strand, within CA264_00480at 105.223 kb on + strand, within CA264_00480at 105.223 kb on + strand, within CA264_00480at 105.223 kb on + strand, within CA264_00480at 105.223 kb on + strand, within CA264_00480at 105.224 kb on - strand, within CA264_00480at 105.242 kb on - strand, within CA264_00480at 105.246 kb on - strand, within CA264_00480at 105.286 kb on + strand, within CA264_00480at 105.308 kb on - strand, within CA264_00480at 105.308 kb on - strand, within CA264_00480at 105.324 kb on + strand, within CA264_00480at 105.358 kb on + strand, within CA264_00480at 105.373 kb on + strand, within CA264_00480at 105.475 kb on + strand, within CA264_00480at 105.573 kb on + strand, within CA264_00480at 105.574 kb on - strand, within CA264_00480at 105.642 kb on + strand, within CA264_00480at 105.643 kb on - strand, within CA264_00480at 105.712 kb on + strand, within CA264_00480at 105.713 kb on - strand, within CA264_00480at 105.732 kb on - strand, within CA264_00480at 105.768 kb on - strand, within CA264_00480at 105.779 kb on + strand, within CA264_00480at 105.779 kb on + strand, within CA264_00480at 105.796 kb on + strand, within CA264_00480at 105.839 kb on - strand, within CA264_00480at 106.026 kb on - strandat 106.039 kb on + strandat 106.045 kb on + strandat 106.045 kb on + strandat 106.095 kb on + strandat 106.096 kb on - strandat 106.114 kb on - strandat 106.117 kb on - strandat 106.217 kb on + strandat 106.218 kb on - strandat 106.276 kb on + strand, within CA264_00485at 106.277 kb on - strand, within CA264_00485at 106.340 kb on + strand, within CA264_00485at 106.346 kb on + strand, within CA264_00485at 106.346 kb on + strand, within CA264_00485at 106.347 kb on - strand, within CA264_00485at 106.347 kb on - strand, within CA264_00485at 106.348 kb on + strand, within CA264_00485at 106.348 kb on + strand, within CA264_00485at 106.348 kb on + strand, within CA264_00485at 106.349 kb on - strand, within CA264_00485at 106.349 kb on - strand, within CA264_00485at 106.353 kb on + strand, within CA264_00485at 106.353 kb on + strand, within CA264_00485at 106.354 kb on - strand, within CA264_00485at 106.354 kb on - strand, within CA264_00485at 106.354 kb on - strand, within CA264_00485at 106.354 kb on - strand, within CA264_00485at 106.404 kb on + strand, within CA264_00485at 106.405 kb on - strand, within CA264_00485at 106.449 kb on + strand, within CA264_00485at 106.460 kb on + strand, within CA264_00485at 106.502 kb on + strand, within CA264_00485at 106.503 kb on - strand, within CA264_00485at 106.607 kb on - strand, within CA264_00485at 106.697 kb on - strand, within CA264_00485at 106.701 kb on - strand, within CA264_00485at 106.742 kb on + strand, within CA264_00485at 106.788 kb on + strand, within CA264_00485at 106.788 kb on + strand, within CA264_00485at 106.788 kb on + strand, within CA264_00485at 106.868 kb on + strand, within CA264_00485at 106.869 kb on - strand, within CA264_00485at 106.869 kb on - strand, within CA264_00485at 106.869 kb on - strand, within CA264_00485at 106.881 kb on - strand, within CA264_00485at 106.886 kb on + strand, within CA264_00485at 106.887 kb on - strand, within CA264_00485at 106.919 kb on + strand, within CA264_00485at 106.919 kb on + strand, within CA264_00485at 106.920 kb on - strand, within CA264_00485at 106.920 kb on - strand, within CA264_00485at 106.922 kb on - strand, within CA264_00485at 106.936 kb on + strand, within CA264_00485at 106.954 kb on - strand, within CA264_00485at 106.954 kb on - strand, within CA264_00485at 106.957 kb on - strand, within CA264_00485at 106.957 kb on - strand, within CA264_00485at 106.957 kb on - strand, within CA264_00485at 107.026 kb on - strand, within CA264_00485at 107.047 kb on - strand, within CA264_00485at 107.050 kb on - strand, within CA264_00485at 107.070 kb on + strand, within CA264_00485at 107.071 kb on - strand, within CA264_00485at 107.073 kb on + strand, within CA264_00485at 107.074 kb on - strand, within CA264_00485at 107.074 kb on - strand, within CA264_00485at 107.076 kb on - strand, within CA264_00485at 107.076 kb on - strand, within CA264_00485

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 20 mM
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104,042 + CA264_00475 0.67 -0.1
104,070 + CA264_00475 0.68 +0.1
104,129 + CA264_00475 0.71 +0.7
104,130 - CA264_00475 0.71 -0.0
104,180 - CA264_00475 0.73 +2.4
104,223 - CA264_00475 0.74 +0.0
104,290 + CA264_00475 0.77 +0.8
104,325 + CA264_00475 0.78 -0.2
104,326 - CA264_00475 0.79 -0.3
104,349 + CA264_00475 0.79 +0.0
104,349 + CA264_00475 0.79 +0.5
104,396 - CA264_00475 0.81 +0.4
104,396 - CA264_00475 0.81 +0.4
104,401 - CA264_00475 0.82 -0.2
104,401 - CA264_00475 0.82 +0.0
104,474 + CA264_00475 0.84 -0.4
104,474 + CA264_00475 0.84 -0.4
104,485 + CA264_00475 0.85 +0.1
104,485 + CA264_00475 0.85 -0.4
104,489 + CA264_00475 0.85 +2.4
104,489 + CA264_00475 0.85 -1.0
104,490 - CA264_00475 0.85 -0.1
104,490 - CA264_00475 0.85 +0.2
104,525 - CA264_00475 0.87 -0.1
104,528 + CA264_00475 0.87 -2.6
104,529 - CA264_00475 0.87 -0.3
104,553 - CA264_00475 0.88 -0.2
104,565 + CA264_00475 0.88 -1.3
104,572 + CA264_00475 0.88 -0.5
104,677 + +0.2
104,677 + +0.3
104,764 + +0.5
104,779 - -0.6
104,801 + -0.5
104,859 - +1.0
104,876 - -0.8
104,893 + +0.7
104,894 - +0.0
104,896 + -0.5
104,897 - -0.2
104,900 - +0.8
104,917 + -0.3
104,927 + -1.1
104,948 + -0.1
104,956 + -0.2
105,073 + CA264_00480 0.11 -0.1
105,116 + CA264_00480 0.14 -0.0
105,116 + CA264_00480 0.14 -0.8
105,125 + CA264_00480 0.15 -2.3
105,126 - CA264_00480 0.15 -0.7
105,219 - CA264_00480 0.23 -0.1
105,219 - CA264_00480 0.23 -0.6
105,223 + CA264_00480 0.23 -0.6
105,223 + CA264_00480 0.23 +1.8
105,223 + CA264_00480 0.23 -0.4
105,223 + CA264_00480 0.23 +0.4
105,223 + CA264_00480 0.23 -0.2
105,224 - CA264_00480 0.24 +0.6
105,242 - CA264_00480 0.25 -1.6
105,246 - CA264_00480 0.25 -0.7
105,286 + CA264_00480 0.29 -0.3
105,308 - CA264_00480 0.31 -0.7
105,308 - CA264_00480 0.31 -0.3
105,324 + CA264_00480 0.32 -0.6
105,358 + CA264_00480 0.35 -0.4
105,373 + CA264_00480 0.36 -0.4
105,475 + CA264_00480 0.45 -0.6
105,573 + CA264_00480 0.53 -1.3
105,574 - CA264_00480 0.53 -0.5
105,642 + CA264_00480 0.59 -1.2
105,643 - CA264_00480 0.59 +0.5
105,712 + CA264_00480 0.65 -0.0
105,713 - CA264_00480 0.65 -0.0
105,732 - CA264_00480 0.67 -1.0
105,768 - CA264_00480 0.70 -1.2
105,779 + CA264_00480 0.71 -1.2
105,779 + CA264_00480 0.71 -0.1
105,796 + CA264_00480 0.72 -0.1
105,839 - CA264_00480 0.76 -1.7
106,026 - -1.2
106,039 + -0.3
106,045 + +0.2
106,045 + -0.3
106,095 + -0.2
106,096 - -1.0
106,114 - +0.1
106,117 - +0.2
106,217 + -0.7
106,218 - -0.8
106,276 + CA264_00485 0.10 -0.2
106,277 - CA264_00485 0.10 -0.0
106,340 + CA264_00485 0.16 -0.4
106,346 + CA264_00485 0.16 +0.7
106,346 + CA264_00485 0.16 -0.3
106,347 - CA264_00485 0.16 +0.8
106,347 - CA264_00485 0.16 -0.2
106,348 + CA264_00485 0.16 -0.2
106,348 + CA264_00485 0.16 +0.0
106,348 + CA264_00485 0.16 +2.4
106,349 - CA264_00485 0.16 -0.3
106,349 - CA264_00485 0.16 -0.4
106,353 + CA264_00485 0.17 -0.5
106,353 + CA264_00485 0.17 -0.5
106,354 - CA264_00485 0.17 +0.3
106,354 - CA264_00485 0.17 -1.1
106,354 - CA264_00485 0.17 +0.9
106,354 - CA264_00485 0.17 -0.5
106,404 + CA264_00485 0.21 -1.0
106,405 - CA264_00485 0.21 -0.0
106,449 + CA264_00485 0.25 +0.8
106,460 + CA264_00485 0.26 -0.3
106,502 + CA264_00485 0.29 +1.1
106,503 - CA264_00485 0.29 -0.1
106,607 - CA264_00485 0.38 +0.3
106,697 - CA264_00485 0.46 +1.5
106,701 - CA264_00485 0.46 -0.2
106,742 + CA264_00485 0.49 -0.6
106,788 + CA264_00485 0.53 -0.2
106,788 + CA264_00485 0.53 +0.4
106,788 + CA264_00485 0.53 -0.6
106,868 + CA264_00485 0.60 -0.2
106,869 - CA264_00485 0.60 -0.7
106,869 - CA264_00485 0.60 -0.8
106,869 - CA264_00485 0.60 -0.4
106,881 - CA264_00485 0.61 -0.1
106,886 + CA264_00485 0.62 +0.3
106,887 - CA264_00485 0.62 -0.3
106,919 + CA264_00485 0.64 +0.1
106,919 + CA264_00485 0.64 -0.6
106,920 - CA264_00485 0.64 -0.4
106,920 - CA264_00485 0.64 -0.7
106,922 - CA264_00485 0.65 +0.2
106,936 + CA264_00485 0.66 -0.9
106,954 - CA264_00485 0.67 -1.4
106,954 - CA264_00485 0.67 -0.1
106,957 - CA264_00485 0.68 +0.1
106,957 - CA264_00485 0.68 -2.3
106,957 - CA264_00485 0.68 -0.3
107,026 - CA264_00485 0.73 +0.4
107,047 - CA264_00485 0.75 -0.9
107,050 - CA264_00485 0.75 -0.2
107,070 + CA264_00485 0.77 -0.6
107,071 - CA264_00485 0.77 -0.5
107,073 + CA264_00485 0.77 +0.0
107,074 - CA264_00485 0.77 -0.9
107,074 - CA264_00485 0.77 -1.5
107,076 - CA264_00485 0.78 -0.4
107,076 - CA264_00485 0.78 -0.6

Or see this region's nucleotide sequence