Strain Fitness in Agrobacterium fabrum C58 around Atu0663

Experiment: D-Mannitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0662 and Atu0663 are separated by 291 nucleotidesAtu0663 and Atu0664 are separated by 165 nucleotides Atu0662: Atu0662 - transcriptional regulator, GntR family, at 656,688 to 657,461 Atu0662 Atu0663: Atu0663 - hypothetical protein, at 657,753 to 659,027 Atu0663 Atu0664: Atu0664 - transcriptional regulator, LysR family, at 659,193 to 660,092 Atu0664 Position (kb) 657 658 659 660Strain fitness (log2 ratio) -2 -1 0 1 2at 657.004 kb on - strand, within Atu0662at 657.012 kb on + strand, within Atu0662at 657.012 kb on + strand, within Atu0662at 657.044 kb on - strand, within Atu0662at 657.092 kb on - strand, within Atu0662at 657.266 kb on - strand, within Atu0662at 657.285 kb on + strand, within Atu0662at 657.325 kb on - strand, within Atu0662at 657.335 kb on + strand, within Atu0662at 657.429 kb on - strandat 657.469 kb on - strandat 657.621 kb on + strandat 657.631 kb on + strandat 657.745 kb on + strandat 657.813 kb on + strandat 657.819 kb on - strandat 657.976 kb on + strand, within Atu0663at 658.115 kb on + strand, within Atu0663at 658.255 kb on + strand, within Atu0663at 658.279 kb on - strand, within Atu0663at 658.289 kb on + strand, within Atu0663at 658.307 kb on - strand, within Atu0663at 658.338 kb on + strand, within Atu0663at 658.362 kb on + strand, within Atu0663at 658.388 kb on - strand, within Atu0663at 658.522 kb on - strand, within Atu0663at 658.522 kb on - strand, within Atu0663at 658.560 kb on + strand, within Atu0663at 658.616 kb on - strand, within Atu0663at 658.616 kb on - strand, within Atu0663at 658.616 kb on - strand, within Atu0663at 658.678 kb on + strand, within Atu0663at 658.694 kb on + strand, within Atu0663at 658.741 kb on - strand, within Atu0663at 658.763 kb on - strand, within Atu0663at 658.771 kb on + strand, within Atu0663at 658.774 kb on - strand, within Atu0663at 658.781 kb on + strand, within Atu0663at 658.787 kb on - strand, within Atu0663at 658.888 kb on - strand, within Atu0663at 658.906 kb on + strandat 658.965 kb on + strandat 658.965 kb on - strandat 659.005 kb on + strandat 659.013 kb on - strandat 659.056 kb on - strandat 659.058 kb on + strandat 659.092 kb on + strandat 659.117 kb on + strandat 659.125 kb on - strandat 659.127 kb on + strandat 659.183 kb on - strandat 659.191 kb on + strandat 659.199 kb on - strandat 659.201 kb on + strandat 659.201 kb on + strandat 659.201 kb on + strandat 659.209 kb on - strandat 659.209 kb on - strandat 659.209 kb on - strandat 659.274 kb on - strandat 659.296 kb on - strand, within Atu0664at 659.300 kb on + strand, within Atu0664at 659.308 kb on - strand, within Atu0664at 659.355 kb on + strand, within Atu0664at 659.388 kb on - strand, within Atu0664at 659.398 kb on - strand, within Atu0664at 659.407 kb on + strand, within Atu0664at 659.506 kb on + strand, within Atu0664at 659.568 kb on - strand, within Atu0664at 659.573 kb on - strand, within Atu0664at 659.600 kb on + strand, within Atu0664at 659.674 kb on + strand, within Atu0664at 659.740 kb on - strand, within Atu0664at 659.740 kb on - strand, within Atu0664at 659.747 kb on + strand, within Atu0664at 659.763 kb on - strand, within Atu0664at 659.827 kb on + strand, within Atu0664at 659.881 kb on + strand, within Atu0664at 659.893 kb on - strand, within Atu0664at 660.012 kb on + strandat 660.020 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol (C)
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657,004 - Atu0662 0.41 -0.6
657,012 + Atu0662 0.42 -0.4
657,012 + Atu0662 0.42 +0.4
657,044 - Atu0662 0.46 +0.7
657,092 - Atu0662 0.52 +0.0
657,266 - Atu0662 0.75 +0.2
657,285 + Atu0662 0.77 -0.0
657,325 - Atu0662 0.82 -0.1
657,335 + Atu0662 0.84 -1.0
657,429 - +0.4
657,469 - +0.3
657,621 + -0.4
657,631 + -0.3
657,745 + +0.5
657,813 + -0.3
657,819 - -0.2
657,976 + Atu0663 0.17 -0.1
658,115 + Atu0663 0.28 +0.1
658,255 + Atu0663 0.39 +1.1
658,279 - Atu0663 0.41 -0.1
658,289 + Atu0663 0.42 -0.8
658,307 - Atu0663 0.43 -0.3
658,338 + Atu0663 0.46 -0.3
658,362 + Atu0663 0.48 -0.5
658,388 - Atu0663 0.50 -0.8
658,522 - Atu0663 0.60 -0.6
658,522 - Atu0663 0.60 +0.7
658,560 + Atu0663 0.63 +0.2
658,616 - Atu0663 0.68 +0.4
658,616 - Atu0663 0.68 +0.4
658,616 - Atu0663 0.68 -0.5
658,678 + Atu0663 0.73 +0.1
658,694 + Atu0663 0.74 -0.2
658,741 - Atu0663 0.77 +0.1
658,763 - Atu0663 0.79 -0.6
658,771 + Atu0663 0.80 -0.2
658,774 - Atu0663 0.80 -0.5
658,781 + Atu0663 0.81 +1.4
658,787 - Atu0663 0.81 -0.1
658,888 - Atu0663 0.89 +1.0
658,906 + +0.4
658,965 + -0.5
658,965 - +0.1
659,005 + -0.3
659,013 - +0.0
659,056 - -0.1
659,058 + +0.4
659,092 + +0.5
659,117 + +0.3
659,125 - -0.3
659,127 + -0.5
659,183 - -0.0
659,191 + +0.4
659,199 - +0.3
659,201 + +2.4
659,201 + +0.1
659,201 + +0.1
659,209 - -0.2
659,209 - -0.3
659,209 - -0.6
659,274 - +0.2
659,296 - Atu0664 0.11 +1.0
659,300 + Atu0664 0.12 -1.9
659,308 - Atu0664 0.13 +0.0
659,355 + Atu0664 0.18 -0.3
659,388 - Atu0664 0.22 -1.3
659,398 - Atu0664 0.23 -1.2
659,407 + Atu0664 0.24 +0.0
659,506 + Atu0664 0.35 -0.5
659,568 - Atu0664 0.42 -0.2
659,573 - Atu0664 0.42 -0.2
659,600 + Atu0664 0.45 -0.7
659,674 + Atu0664 0.53 +0.0
659,740 - Atu0664 0.61 +0.0
659,740 - Atu0664 0.61 +1.4
659,747 + Atu0664 0.62 +0.0
659,763 - Atu0664 0.63 -0.3
659,827 + Atu0664 0.70 -0.4
659,881 + Atu0664 0.76 -0.2
659,893 - Atu0664 0.78 -0.6
660,012 + -0.2
660,020 + -0.1

Or see this region's nucleotide sequence