Experiment: D-Mannitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0430 and Atu0431 are separated by 72 nucleotides Atu0431 and Atu0432 are separated by 234 nucleotides Atu0432 and Atu0434 are separated by 195 nucleotides
Atu0430: Atu0430 - chaperonin (heat shock protein hsp33), at 426,439 to 427,428
Atu0430
Atu0431: Atu0431 - apaG protein, at 427,501 to 427,893
Atu0431
Atu0432: Atu0432 - O-succinylhomoserine sulfhydrylase, at 428,128 to 429,312
Atu0432
Atu0434: Atu0434 - 2'-deoxycytidine 5'-triphosphate deaminase, at 429,508 to 430,620
Atu0434
Position (kb) 428
429
430 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 427.155 kb on + strand, within Atu0430 at 427.163 kb on - strand, within Atu0430 at 427.296 kb on + strand, within Atu0430 at 427.296 kb on + strand, within Atu0430 at 427.296 kb on + strand, within Atu0430 at 427.304 kb on - strand, within Atu0430 at 427.304 kb on - strand, within Atu0430 at 427.340 kb on - strand at 427.534 kb on - strand at 427.617 kb on - strand, within Atu0431 at 427.767 kb on + strand, within Atu0431 at 427.788 kb on + strand, within Atu0431 at 427.894 kb on - strand at 427.894 kb on - strand at 427.897 kb on + strand at 427.936 kb on - strand at 427.942 kb on + strand at 427.950 kb on - strand at 428.011 kb on + strand at 428.019 kb on - strand at 428.077 kb on + strand at 428.093 kb on - strand at 428.103 kb on - strand at 428.139 kb on - strand at 428.152 kb on - strand at 428.246 kb on + strand at 428.262 kb on - strand, within Atu0432 at 428.407 kb on + strand, within Atu0432 at 428.554 kb on - strand, within Atu0432 at 428.555 kb on + strand, within Atu0432 at 428.555 kb on + strand, within Atu0432 at 428.557 kb on + strand, within Atu0432 at 428.557 kb on + strand, within Atu0432 at 428.565 kb on - strand, within Atu0432 at 428.565 kb on - strand, within Atu0432 at 428.660 kb on - strand, within Atu0432 at 428.669 kb on + strand, within Atu0432 at 429.136 kb on + strand, within Atu0432 at 429.219 kb on + strand at 429.227 kb on - strand at 429.227 kb on - strand at 429.272 kb on - strand at 429.452 kb on - strand at 429.525 kb on + strand at 429.811 kb on - strand, within Atu0434 at 430.141 kb on + strand, within Atu0434
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannitol (C) remove 427,155 + Atu0430 0.72 +1.2 427,163 - Atu0430 0.73 +0.5 427,296 + Atu0430 0.87 -0.3 427,296 + Atu0430 0.87 -0.3 427,296 + Atu0430 0.87 +0.1 427,304 - Atu0430 0.87 +0.2 427,304 - Atu0430 0.87 -0.3 427,340 - +0.2 427,534 - -0.4 427,617 - Atu0431 0.30 -0.4 427,767 + Atu0431 0.68 -0.1 427,788 + Atu0431 0.73 -0.2 427,894 - +0.2 427,894 - +0.1 427,897 + +0.6 427,936 - -0.5 427,942 + +0.5 427,950 - +0.1 428,011 + -0.3 428,019 - -0.5 428,077 + +0.5 428,093 - -0.1 428,103 - +0.0 428,139 - -7.0 428,152 - +0.3 428,246 + -1.9 428,262 - Atu0432 0.11 -6.0 428,407 + Atu0432 0.24 -6.2 428,554 - Atu0432 0.36 -4.7 428,555 + Atu0432 0.36 -3.1 428,555 + Atu0432 0.36 -5.3 428,557 + Atu0432 0.36 -5.3 428,557 + Atu0432 0.36 -3.2 428,565 - Atu0432 0.37 -3.9 428,565 - Atu0432 0.37 -5.1 428,660 - Atu0432 0.45 -3.0 428,669 + Atu0432 0.46 -3.6 429,136 + Atu0432 0.85 -4.6 429,219 + -7.2 429,227 - -5.5 429,227 - -2.9 429,272 - -2.1 429,452 - -0.7 429,525 + -0.6 429,811 - Atu0434 0.27 -1.4 430,141 + Atu0434 0.57 -2.2
Or see this region's nucleotide sequence