Experiment: 150_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22910 and AMB_RS22915 are separated by 100 nucleotides AMB_RS22915 and AMB_RS22920 are separated by 25 nucleotides AMB_RS22920 and AMB_RS22925 are separated by 101 nucleotides AMB_RS22925 and AMB_RS22930 are separated by 3 nucleotides
AMB_RS22910: AMB_RS22910 - hypothetical protein, at 4,941,169 to 4,941,825
_RS22910
AMB_RS22915: AMB_RS22915 - histidine triad nucleotide-binding protein, at 4,941,926 to 4,942,294
_RS22915
AMB_RS22920: AMB_RS22920 - phosphoribosyl-ATP pyrophosphatase, at 4,942,320 to 4,942,649
_RS22920
AMB_RS22925: AMB_RS22925 - imidazole glycerol phosphate synthase cyclase subunit, at 4,942,751 to 4,943,509
_RS22925
AMB_RS22930: AMB_RS22930 - 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase, at 4,943,513 to 4,944,232
_RS22930
Position (kb) 4942
4943 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4941.347 kb on - strand, within AMB_RS22910 at 4941.347 kb on - strand, within AMB_RS22910 at 4941.347 kb on - strand, within AMB_RS22910 at 4941.347 kb on - strand, within AMB_RS22910 at 4941.347 kb on - strand, within AMB_RS22910 at 4941.491 kb on - strand, within AMB_RS22910 at 4941.502 kb on + strand, within AMB_RS22910 at 4941.590 kb on + strand, within AMB_RS22910 at 4941.591 kb on - strand, within AMB_RS22910 at 4941.623 kb on - strand, within AMB_RS22910 at 4941.679 kb on + strand, within AMB_RS22910 at 4941.679 kb on + strand, within AMB_RS22910 at 4941.679 kb on + strand, within AMB_RS22910 at 4941.679 kb on + strand, within AMB_RS22910 at 4941.679 kb on + strand, within AMB_RS22910 at 4941.679 kb on + strand, within AMB_RS22910 at 4941.679 kb on + strand, within AMB_RS22910 at 4941.679 kb on + strand, within AMB_RS22910 at 4941.679 kb on + strand, within AMB_RS22910 at 4941.680 kb on - strand, within AMB_RS22910 at 4941.681 kb on + strand, within AMB_RS22910 at 4941.775 kb on - strand at 4941.775 kb on - strand at 4941.775 kb on - strand at 4941.824 kb on - strand at 4941.885 kb on + strand at 4941.886 kb on - strand at 4941.886 kb on - strand at 4941.886 kb on - strand at 4941.923 kb on - strand at 4941.923 kb on - strand at 4942.021 kb on + strand, within AMB_RS22915 at 4942.022 kb on - strand, within AMB_RS22915 at 4942.146 kb on + strand, within AMB_RS22915 at 4942.146 kb on + strand, within AMB_RS22915 at 4942.146 kb on + strand, within AMB_RS22915 at 4942.147 kb on - strand, within AMB_RS22915 at 4942.147 kb on - strand, within AMB_RS22915 at 4942.147 kb on - strand, within AMB_RS22915 at 4942.147 kb on - strand, within AMB_RS22915 at 4942.147 kb on - strand, within AMB_RS22915 at 4942.147 kb on - strand, within AMB_RS22915 at 4942.213 kb on + strand, within AMB_RS22915 at 4942.213 kb on + strand, within AMB_RS22915 at 4942.213 kb on + strand, within AMB_RS22915 at 4942.213 kb on + strand, within AMB_RS22915 at 4942.214 kb on - strand, within AMB_RS22915 at 4942.288 kb on - strand at 4942.665 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_2 remove 4,941,347 - AMB_RS22910 0.27 +1.0 4,941,347 - AMB_RS22910 0.27 -0.5 4,941,347 - AMB_RS22910 0.27 +0.0 4,941,347 - AMB_RS22910 0.27 +1.0 4,941,347 - AMB_RS22910 0.27 -2.0 4,941,491 - AMB_RS22910 0.49 +0.1 4,941,502 + AMB_RS22910 0.51 -2.4 4,941,590 + AMB_RS22910 0.64 -1.0 4,941,591 - AMB_RS22910 0.64 -0.5 4,941,623 - AMB_RS22910 0.69 -0.4 4,941,679 + AMB_RS22910 0.78 -0.8 4,941,679 + AMB_RS22910 0.78 +1.0 4,941,679 + AMB_RS22910 0.78 -0.3 4,941,679 + AMB_RS22910 0.78 +0.8 4,941,679 + AMB_RS22910 0.78 -0.2 4,941,679 + AMB_RS22910 0.78 -2.3 4,941,679 + AMB_RS22910 0.78 +0.2 4,941,679 + AMB_RS22910 0.78 -3.2 4,941,679 + AMB_RS22910 0.78 +0.0 4,941,680 - AMB_RS22910 0.78 +0.5 4,941,681 + AMB_RS22910 0.78 -1.0 4,941,775 - +0.0 4,941,775 - +0.3 4,941,775 - -3.9 4,941,824 - -1.2 4,941,885 + -0.2 4,941,886 - -3.0 4,941,886 - +0.3 4,941,886 - -2.0 4,941,923 - +0.5 4,941,923 - -1.3 4,942,021 + AMB_RS22915 0.26 -3.9 4,942,022 - AMB_RS22915 0.26 -2.0 4,942,146 + AMB_RS22915 0.60 +0.2 4,942,146 + AMB_RS22915 0.60 -0.1 4,942,146 + AMB_RS22915 0.60 -2.0 4,942,147 - AMB_RS22915 0.60 -3.6 4,942,147 - AMB_RS22915 0.60 +0.1 4,942,147 - AMB_RS22915 0.60 -0.2 4,942,147 - AMB_RS22915 0.60 +0.6 4,942,147 - AMB_RS22915 0.60 -2.0 4,942,147 - AMB_RS22915 0.60 +0.2 4,942,213 + AMB_RS22915 0.78 -3.0 4,942,213 + AMB_RS22915 0.78 -1.8 4,942,213 + AMB_RS22915 0.78 -0.7 4,942,213 + AMB_RS22915 0.78 -1.0 4,942,214 - AMB_RS22915 0.78 -3.1 4,942,288 - +0.9 4,942,665 - +1.8
Or see this region's nucleotide sequence