Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21660

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS21645 and AMB_RS21650 are separated by 18 nucleotidesAMB_RS21650 and AMB_RS21655 are separated by 11 nucleotidesAMB_RS21655 and AMB_RS21660 are separated by 49 nucleotidesAMB_RS21660 and AMB_RS21665 are separated by 107 nucleotidesAMB_RS21665 and AMB_RS21670 are separated by 82 nucleotides AMB_RS21645: AMB_RS21645 - hypothetical protein, at 4,689,067 to 4,690,551 _RS21645 AMB_RS21650: AMB_RS21650 - hypothetical protein, at 4,690,570 to 4,690,869 _RS21650 AMB_RS21655: AMB_RS21655 - hypothetical protein, at 4,690,881 to 4,691,402 _RS21655 AMB_RS21660: AMB_RS21660 - hypothetical protein, at 4,691,452 to 4,691,952 _RS21660 AMB_RS21665: AMB_RS21665 - hypothetical protein, at 4,692,060 to 4,692,290 _RS21665 AMB_RS21670: AMB_RS21670 - thioredoxin TrxA, at 4,692,373 to 4,692,687 _RS21670 Position (kb) 4691 4692Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4690.745 kb on - strand, within AMB_RS21650at 4690.768 kb on + strand, within AMB_RS21650at 4690.768 kb on + strand, within AMB_RS21650at 4690.768 kb on + strand, within AMB_RS21650at 4690.768 kb on + strand, within AMB_RS21650at 4690.769 kb on - strand, within AMB_RS21650at 4690.769 kb on - strand, within AMB_RS21650at 4690.769 kb on - strand, within AMB_RS21650at 4690.769 kb on - strand, within AMB_RS21650at 4690.868 kb on - strandat 4691.184 kb on + strand, within AMB_RS21655at 4691.184 kb on + strand, within AMB_RS21655at 4691.185 kb on - strand, within AMB_RS21655at 4691.621 kb on + strand, within AMB_RS21660at 4691.621 kb on + strand, within AMB_RS21660at 4691.621 kb on + strand, within AMB_RS21660at 4691.621 kb on + strand, within AMB_RS21660at 4691.621 kb on + strand, within AMB_RS21660at 4691.621 kb on + strand, within AMB_RS21660at 4691.621 kb on + strand, within AMB_RS21660at 4691.622 kb on - strand, within AMB_RS21660at 4691.622 kb on - strand, within AMB_RS21660at 4691.622 kb on - strand, within AMB_RS21660at 4691.622 kb on - strand, within AMB_RS21660at 4691.622 kb on - strand, within AMB_RS21660at 4691.622 kb on - strand, within AMB_RS21660at 4691.622 kb on - strand, within AMB_RS21660at 4691.624 kb on + strand, within AMB_RS21660at 4691.624 kb on + strand, within AMB_RS21660at 4691.625 kb on - strand, within AMB_RS21660at 4691.657 kb on + strand, within AMB_RS21660at 4691.657 kb on + strand, within AMB_RS21660at 4691.657 kb on + strand, within AMB_RS21660at 4691.657 kb on + strand, within AMB_RS21660at 4691.658 kb on - strand, within AMB_RS21660at 4691.658 kb on - strand, within AMB_RS21660at 4691.658 kb on - strand, within AMB_RS21660at 4691.662 kb on + strand, within AMB_RS21660at 4691.663 kb on - strand, within AMB_RS21660at 4691.663 kb on - strand, within AMB_RS21660at 4691.687 kb on + strand, within AMB_RS21660at 4691.688 kb on - strand, within AMB_RS21660at 4691.688 kb on - strand, within AMB_RS21660at 4691.688 kb on - strand, within AMB_RS21660at 4691.688 kb on - strand, within AMB_RS21660at 4691.688 kb on - strand, within AMB_RS21660at 4691.688 kb on - strand, within AMB_RS21660at 4691.736 kb on - strand, within AMB_RS21660at 4691.885 kb on + strand, within AMB_RS21660at 4691.885 kb on + strand, within AMB_RS21660at 4691.885 kb on + strand, within AMB_RS21660at 4691.886 kb on - strand, within AMB_RS21660at 4691.886 kb on - strand, within AMB_RS21660at 4691.886 kb on - strand, within AMB_RS21660at 4691.886 kb on - strand, within AMB_RS21660at 4691.943 kb on + strandat 4691.944 kb on - strandat 4691.945 kb on + strandat 4691.946 kb on - strandat 4691.946 kb on - strandat 4691.952 kb on + strandat 4691.952 kb on + strandat 4691.952 kb on + strandat 4691.953 kb on - strandat 4692.247 kb on + strand, within AMB_RS21665at 4692.247 kb on + strand, within AMB_RS21665at 4692.248 kb on - strand, within AMB_RS21665at 4692.375 kb on - strandat 4692.786 kb on - strandat 4692.786 kb on - strandat 4692.786 kb on - strandat 4692.925 kb on + strandat 4692.925 kb on + strandat 4692.925 kb on + strandat 4692.925 kb on + strandat 4692.925 kb on + strandat 4692.925 kb on + strandat 4692.925 kb on + strandat 4692.927 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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4,690,745 - AMB_RS21650 0.58 -1.8
4,690,768 + AMB_RS21650 0.66 -3.1
4,690,768 + AMB_RS21650 0.66 -3.2
4,690,768 + AMB_RS21650 0.66 +2.4
4,690,768 + AMB_RS21650 0.66 -3.7
4,690,769 - AMB_RS21650 0.66 -0.4
4,690,769 - AMB_RS21650 0.66 -2.1
4,690,769 - AMB_RS21650 0.66 +1.9
4,690,769 - AMB_RS21650 0.66 -1.6
4,690,868 - -0.5
4,691,184 + AMB_RS21655 0.58 +0.0
4,691,184 + AMB_RS21655 0.58 -0.6
4,691,185 - AMB_RS21655 0.58 +0.2
4,691,621 + AMB_RS21660 0.34 +0.3
4,691,621 + AMB_RS21660 0.34 -4.0
4,691,621 + AMB_RS21660 0.34 -0.9
4,691,621 + AMB_RS21660 0.34 -0.2
4,691,621 + AMB_RS21660 0.34 -4.3
4,691,621 + AMB_RS21660 0.34 -0.7
4,691,621 + AMB_RS21660 0.34 -0.2
4,691,622 - AMB_RS21660 0.34 -0.5
4,691,622 - AMB_RS21660 0.34 -4.2
4,691,622 - AMB_RS21660 0.34 -3.4
4,691,622 - AMB_RS21660 0.34 -1.0
4,691,622 - AMB_RS21660 0.34 -3.8
4,691,622 - AMB_RS21660 0.34 +0.8
4,691,622 - AMB_RS21660 0.34 -1.8
4,691,624 + AMB_RS21660 0.34 -2.0
4,691,624 + AMB_RS21660 0.34 -1.7
4,691,625 - AMB_RS21660 0.35 -0.6
4,691,657 + AMB_RS21660 0.41 +1.7
4,691,657 + AMB_RS21660 0.41 -1.0
4,691,657 + AMB_RS21660 0.41 -3.1
4,691,657 + AMB_RS21660 0.41 -1.3
4,691,658 - AMB_RS21660 0.41 +1.0
4,691,658 - AMB_RS21660 0.41 +0.2
4,691,658 - AMB_RS21660 0.41 -0.4
4,691,662 + AMB_RS21660 0.42 -2.1
4,691,663 - AMB_RS21660 0.42 +2.2
4,691,663 - AMB_RS21660 0.42 -0.2
4,691,687 + AMB_RS21660 0.47 -4.0
4,691,688 - AMB_RS21660 0.47 -0.0
4,691,688 - AMB_RS21660 0.47 +0.3
4,691,688 - AMB_RS21660 0.47 -2.6
4,691,688 - AMB_RS21660 0.47 -3.1
4,691,688 - AMB_RS21660 0.47 -0.7
4,691,688 - AMB_RS21660 0.47 +1.8
4,691,736 - AMB_RS21660 0.57 +1.0
4,691,885 + AMB_RS21660 0.86 +0.0
4,691,885 + AMB_RS21660 0.86 -0.4
4,691,885 + AMB_RS21660 0.86 +1.1
4,691,886 - AMB_RS21660 0.87 -0.4
4,691,886 - AMB_RS21660 0.87 -2.6
4,691,886 - AMB_RS21660 0.87 +1.3
4,691,886 - AMB_RS21660 0.87 -3.0
4,691,943 + -2.3
4,691,944 - -1.4
4,691,945 + -0.7
4,691,946 - +0.4
4,691,946 - -2.0
4,691,952 + -1.5
4,691,952 + -0.2
4,691,952 + -1.2
4,691,953 - -2.7
4,692,247 + AMB_RS21665 0.81 -1.3
4,692,247 + AMB_RS21665 0.81 +1.0
4,692,248 - AMB_RS21665 0.81 -1.4
4,692,375 - +2.2
4,692,786 - +1.0
4,692,786 - +0.5
4,692,786 - -2.6
4,692,925 + -1.3
4,692,925 + -1.2
4,692,925 + -2.4
4,692,925 + +2.1
4,692,925 + -3.1
4,692,925 + -4.3
4,692,925 + +0.1
4,692,927 + +0.3

Or see this region's nucleotide sequence