Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20850

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20845 and AMB_RS20850 are separated by 202 nucleotidesAMB_RS20850 and AMB_RS20855 are separated by 127 nucleotides AMB_RS20845: AMB_RS20845 - hypothetical protein, at 4,525,686 to 4,526,954 _RS20845 AMB_RS20850: AMB_RS20850 - S-methyl-5-thioribose-1-phosphate isomerase, at 4,527,157 to 4,528,245 _RS20850 AMB_RS20855: AMB_RS20855 - DNA recombination protein RmuC, at 4,528,373 to 4,529,701 _RS20855 Position (kb) 4527 4528 4529Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4526.223 kb on - strand, within AMB_RS20845at 4526.250 kb on + strand, within AMB_RS20845at 4526.250 kb on + strand, within AMB_RS20845at 4526.255 kb on + strand, within AMB_RS20845at 4526.303 kb on + strand, within AMB_RS20845at 4526.332 kb on + strand, within AMB_RS20845at 4526.332 kb on + strand, within AMB_RS20845at 4526.551 kb on + strand, within AMB_RS20845at 4526.551 kb on + strand, within AMB_RS20845at 4526.552 kb on - strand, within AMB_RS20845at 4526.552 kb on - strand, within AMB_RS20845at 4526.552 kb on - strand, within AMB_RS20845at 4526.611 kb on - strand, within AMB_RS20845at 4526.611 kb on - strand, within AMB_RS20845at 4526.611 kb on - strand, within AMB_RS20845at 4526.611 kb on - strand, within AMB_RS20845at 4526.670 kb on + strand, within AMB_RS20845at 4526.671 kb on - strand, within AMB_RS20845at 4526.679 kb on + strand, within AMB_RS20845at 4526.679 kb on + strand, within AMB_RS20845at 4526.679 kb on + strand, within AMB_RS20845at 4526.679 kb on + strand, within AMB_RS20845at 4526.679 kb on + strand, within AMB_RS20845at 4526.734 kb on - strand, within AMB_RS20845at 4526.772 kb on + strand, within AMB_RS20845at 4526.772 kb on + strand, within AMB_RS20845at 4526.897 kb on + strandat 4526.897 kb on + strandat 4526.897 kb on + strandat 4526.897 kb on + strandat 4526.897 kb on + strandat 4526.897 kb on + strandat 4526.897 kb on + strandat 4526.897 kb on + strandat 4526.897 kb on + strandat 4526.898 kb on - strandat 4526.898 kb on - strandat 4526.898 kb on - strandat 4526.898 kb on - strandat 4526.898 kb on - strandat 4526.902 kb on - strandat 4526.902 kb on - strandat 4526.939 kb on + strandat 4526.939 kb on + strandat 4526.940 kb on - strandat 4527.124 kb on + strandat 4527.403 kb on + strand, within AMB_RS20850at 4527.403 kb on + strand, within AMB_RS20850at 4527.403 kb on + strand, within AMB_RS20850at 4527.403 kb on + strand, within AMB_RS20850at 4527.514 kb on + strand, within AMB_RS20850at 4527.694 kb on + strand, within AMB_RS20850at 4527.694 kb on + strand, within AMB_RS20850at 4527.694 kb on + strand, within AMB_RS20850at 4527.694 kb on + strand, within AMB_RS20850at 4527.694 kb on + strand, within AMB_RS20850at 4527.694 kb on + strand, within AMB_RS20850at 4527.695 kb on - strand, within AMB_RS20850at 4527.695 kb on - strand, within AMB_RS20850at 4527.807 kb on + strand, within AMB_RS20850at 4527.807 kb on + strand, within AMB_RS20850at 4527.925 kb on + strand, within AMB_RS20850at 4527.925 kb on + strand, within AMB_RS20850at 4527.925 kb on + strand, within AMB_RS20850at 4527.925 kb on + strand, within AMB_RS20850at 4527.925 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.968 kb on - strand, within AMB_RS20850at 4527.968 kb on - strand, within AMB_RS20850at 4527.968 kb on - strand, within AMB_RS20850at 4527.968 kb on - strand, within AMB_RS20850at 4527.968 kb on - strand, within AMB_RS20850at 4528.135 kb on + strand, within AMB_RS20850at 4528.135 kb on + strand, within AMB_RS20850at 4528.135 kb on + strand, within AMB_RS20850at 4528.243 kb on + strandat 4528.243 kb on + strandat 4528.309 kb on + strandat 4528.561 kb on - strand, within AMB_RS20855at 4528.701 kb on + strand, within AMB_RS20855at 4528.701 kb on + strand, within AMB_RS20855at 4528.701 kb on + strand, within AMB_RS20855at 4528.701 kb on + strand, within AMB_RS20855at 4528.701 kb on + strand, within AMB_RS20855at 4528.702 kb on - strand, within AMB_RS20855at 4528.753 kb on - strand, within AMB_RS20855at 4528.753 kb on - strand, within AMB_RS20855at 4528.753 kb on - strand, within AMB_RS20855at 4528.813 kb on - strand, within AMB_RS20855at 4528.813 kb on - strand, within AMB_RS20855at 4528.813 kb on - strand, within AMB_RS20855at 4528.813 kb on - strand, within AMB_RS20855at 4528.923 kb on + strand, within AMB_RS20855at 4529.052 kb on + strand, within AMB_RS20855at 4529.052 kb on + strand, within AMB_RS20855at 4529.052 kb on + strand, within AMB_RS20855at 4529.052 kb on + strand, within AMB_RS20855at 4529.053 kb on - strand, within AMB_RS20855

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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4,526,223 - AMB_RS20845 0.42 +0.1
4,526,250 + AMB_RS20845 0.44 +0.3
4,526,250 + AMB_RS20845 0.44 -4.0
4,526,255 + AMB_RS20845 0.45 +1.0
4,526,303 + AMB_RS20845 0.49 +0.9
4,526,332 + AMB_RS20845 0.51 -3.4
4,526,332 + AMB_RS20845 0.51 +0.0
4,526,551 + AMB_RS20845 0.68 -3.6
4,526,551 + AMB_RS20845 0.68 -3.4
4,526,552 - AMB_RS20845 0.68 -4.1
4,526,552 - AMB_RS20845 0.68 -2.4
4,526,552 - AMB_RS20845 0.68 -0.4
4,526,611 - AMB_RS20845 0.73 -0.3
4,526,611 - AMB_RS20845 0.73 -1.0
4,526,611 - AMB_RS20845 0.73 -0.2
4,526,611 - AMB_RS20845 0.73 +0.4
4,526,670 + AMB_RS20845 0.78 +0.0
4,526,671 - AMB_RS20845 0.78 +1.4
4,526,679 + AMB_RS20845 0.78 +2.3
4,526,679 + AMB_RS20845 0.78 -2.4
4,526,679 + AMB_RS20845 0.78 -2.6
4,526,679 + AMB_RS20845 0.78 +0.6
4,526,679 + AMB_RS20845 0.78 -0.8
4,526,734 - AMB_RS20845 0.83 -1.6
4,526,772 + AMB_RS20845 0.86 -1.1
4,526,772 + AMB_RS20845 0.86 -1.9
4,526,897 + +0.7
4,526,897 + +0.6
4,526,897 + +2.4
4,526,897 + +2.2
4,526,897 + -2.0
4,526,897 + -3.1
4,526,897 + +1.1
4,526,897 + +2.2
4,526,897 + +1.1
4,526,898 - -3.6
4,526,898 - +0.7
4,526,898 - +0.6
4,526,898 - -0.6
4,526,898 - +1.2
4,526,902 - -2.6
4,526,902 - -2.8
4,526,939 + -0.1
4,526,939 + +0.9
4,526,940 - -1.5
4,527,124 + -1.8
4,527,403 + AMB_RS20850 0.23 -2.3
4,527,403 + AMB_RS20850 0.23 +2.0
4,527,403 + AMB_RS20850 0.23 -1.6
4,527,403 + AMB_RS20850 0.23 -2.0
4,527,514 + AMB_RS20850 0.33 -1.6
4,527,694 + AMB_RS20850 0.49 +0.8
4,527,694 + AMB_RS20850 0.49 -1.6
4,527,694 + AMB_RS20850 0.49 -2.9
4,527,694 + AMB_RS20850 0.49 -1.8
4,527,694 + AMB_RS20850 0.49 -2.0
4,527,694 + AMB_RS20850 0.49 -1.1
4,527,695 - AMB_RS20850 0.49 -3.7
4,527,695 - AMB_RS20850 0.49 -1.8
4,527,807 + AMB_RS20850 0.60 +4.2
4,527,807 + AMB_RS20850 0.60 -2.9
4,527,925 + AMB_RS20850 0.71 +1.0
4,527,925 + AMB_RS20850 0.71 -3.4
4,527,925 + AMB_RS20850 0.71 -3.9
4,527,925 + AMB_RS20850 0.71 -3.4
4,527,925 + AMB_RS20850 0.71 -2.7
4,527,967 + AMB_RS20850 0.74 -1.3
4,527,967 + AMB_RS20850 0.74 -3.4
4,527,967 + AMB_RS20850 0.74 +0.0
4,527,967 + AMB_RS20850 0.74 +1.0
4,527,967 + AMB_RS20850 0.74 +0.6
4,527,967 + AMB_RS20850 0.74 +1.1
4,527,967 + AMB_RS20850 0.74 -3.1
4,527,967 + AMB_RS20850 0.74 -0.2
4,527,967 + AMB_RS20850 0.74 -0.6
4,527,967 + AMB_RS20850 0.74 -4.4
4,527,967 + AMB_RS20850 0.74 -1.0
4,527,967 + AMB_RS20850 0.74 -1.8
4,527,967 + AMB_RS20850 0.74 +1.0
4,527,968 - AMB_RS20850 0.74 +1.8
4,527,968 - AMB_RS20850 0.74 -1.6
4,527,968 - AMB_RS20850 0.74 +0.0
4,527,968 - AMB_RS20850 0.74 +0.8
4,527,968 - AMB_RS20850 0.74 +0.3
4,528,135 + AMB_RS20850 0.90 +0.7
4,528,135 + AMB_RS20850 0.90 -1.6
4,528,135 + AMB_RS20850 0.90 +0.1
4,528,243 + +0.0
4,528,243 + +0.8
4,528,309 + -3.4
4,528,561 - AMB_RS20855 0.14 -3.9
4,528,701 + AMB_RS20855 0.25 +0.8
4,528,701 + AMB_RS20855 0.25 +1.1
4,528,701 + AMB_RS20855 0.25 -0.2
4,528,701 + AMB_RS20855 0.25 +0.0
4,528,701 + AMB_RS20855 0.25 +0.1
4,528,702 - AMB_RS20855 0.25 -4.3
4,528,753 - AMB_RS20855 0.29 -0.4
4,528,753 - AMB_RS20855 0.29 +1.3
4,528,753 - AMB_RS20855 0.29 +0.3
4,528,813 - AMB_RS20855 0.33 -2.0
4,528,813 - AMB_RS20855 0.33 -0.1
4,528,813 - AMB_RS20855 0.33 +1.0
4,528,813 - AMB_RS20855 0.33 -3.2
4,528,923 + AMB_RS20855 0.41 +0.9
4,529,052 + AMB_RS20855 0.51 +0.3
4,529,052 + AMB_RS20855 0.51 -1.3
4,529,052 + AMB_RS20855 0.51 +0.5
4,529,052 + AMB_RS20855 0.51 -0.6
4,529,053 - AMB_RS20855 0.51 +0.4

Or see this region's nucleotide sequence