Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19425

Experiment: 150_nonmag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS19415 and AMB_RS19420 are separated by 123 nucleotidesAMB_RS19420 and AMB_RS19425 are separated by 16 nucleotidesAMB_RS19425 and AMB_RS19430 are separated by 879 nucleotides AMB_RS19415: AMB_RS19415 - hypothetical protein, at 4,234,873 to 4,235,865 _RS19415 AMB_RS19420: AMB_RS19420 - hemerythrin, at 4,235,989 to 4,236,423 _RS19420 AMB_RS19425: AMB_RS19425 - hypothetical protein, at 4,236,440 to 4,237,171 _RS19425 AMB_RS19430: AMB_RS19430 - transcriptional regulator MraZ, at 4,238,051 to 4,238,512 _RS19430 Position (kb) 4236 4237 4238Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4235.891 kb on + strandat 4235.892 kb on - strandat 4235.892 kb on - strandat 4235.930 kb on + strandat 4235.930 kb on + strandat 4235.930 kb on + strandat 4235.931 kb on - strandat 4235.937 kb on + strandat 4235.937 kb on + strandat 4235.938 kb on - strandat 4235.944 kb on + strandat 4235.944 kb on + strandat 4235.945 kb on - strandat 4235.945 kb on - strandat 4235.949 kb on + strandat 4235.949 kb on + strandat 4235.950 kb on - strandat 4235.950 kb on - strandat 4235.950 kb on - strandat 4235.950 kb on - strandat 4235.951 kb on + strandat 4235.952 kb on - strandat 4235.952 kb on - strandat 4236.182 kb on + strand, within AMB_RS19420at 4236.272 kb on - strand, within AMB_RS19420at 4236.352 kb on - strand, within AMB_RS19420at 4236.357 kb on + strand, within AMB_RS19420at 4236.358 kb on - strand, within AMB_RS19420at 4236.358 kb on - strand, within AMB_RS19420at 4236.364 kb on + strand, within AMB_RS19420at 4236.364 kb on + strand, within AMB_RS19420at 4236.364 kb on + strand, within AMB_RS19420at 4236.365 kb on - strand, within AMB_RS19420at 4236.365 kb on - strand, within AMB_RS19420at 4236.404 kb on + strandat 4236.630 kb on + strand, within AMB_RS19425at 4236.630 kb on + strand, within AMB_RS19425at 4236.630 kb on + strand, within AMB_RS19425at 4236.630 kb on + strand, within AMB_RS19425at 4236.630 kb on + strand, within AMB_RS19425at 4236.630 kb on + strand, within AMB_RS19425at 4236.630 kb on + strand, within AMB_RS19425at 4236.630 kb on + strand, within AMB_RS19425at 4236.631 kb on - strand, within AMB_RS19425at 4236.631 kb on - strand, within AMB_RS19425at 4236.631 kb on - strand, within AMB_RS19425at 4236.631 kb on - strand, within AMB_RS19425at 4236.884 kb on + strand, within AMB_RS19425at 4236.885 kb on - strand, within AMB_RS19425at 4236.885 kb on - strand, within AMB_RS19425at 4236.885 kb on - strand, within AMB_RS19425at 4236.943 kb on + strand, within AMB_RS19425at 4236.943 kb on + strand, within AMB_RS19425at 4236.944 kb on - strand, within AMB_RS19425at 4236.944 kb on - strand, within AMB_RS19425at 4236.973 kb on + strand, within AMB_RS19425at 4236.974 kb on - strand, within AMB_RS19425at 4236.998 kb on + strand, within AMB_RS19425at 4236.998 kb on + strand, within AMB_RS19425at 4236.998 kb on + strand, within AMB_RS19425at 4236.998 kb on + strand, within AMB_RS19425at 4236.998 kb on + strand, within AMB_RS19425at 4236.999 kb on - strand, within AMB_RS19425at 4236.999 kb on - strand, within AMB_RS19425at 4236.999 kb on - strand, within AMB_RS19425at 4237.173 kb on + strandat 4237.200 kb on + strandat 4237.259 kb on + strandat 4237.259 kb on + strandat 4237.260 kb on - strandat 4237.891 kb on + strandat 4237.891 kb on + strandat 4237.914 kb on + strandat 4237.914 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
remove
4,235,891 + -3.7
4,235,892 - -0.1
4,235,892 - -3.4
4,235,930 + +1.3
4,235,930 + +0.4
4,235,930 + +2.0
4,235,931 - -3.5
4,235,937 + -2.0
4,235,937 + -2.6
4,235,938 - +0.4
4,235,944 + +0.7
4,235,944 + +0.6
4,235,945 - +1.5
4,235,945 - -0.2
4,235,949 + -0.1
4,235,949 + -1.3
4,235,950 - -0.0
4,235,950 - +0.0
4,235,950 - -2.1
4,235,950 - -0.2
4,235,951 + +0.3
4,235,952 - +0.9
4,235,952 - +0.2
4,236,182 + AMB_RS19420 0.44 +0.2
4,236,272 - AMB_RS19420 0.65 -0.0
4,236,352 - AMB_RS19420 0.83 -0.1
4,236,357 + AMB_RS19420 0.85 -2.1
4,236,358 - AMB_RS19420 0.85 -2.4
4,236,358 - AMB_RS19420 0.85 +0.1
4,236,364 + AMB_RS19420 0.86 +0.9
4,236,364 + AMB_RS19420 0.86 -1.3
4,236,364 + AMB_RS19420 0.86 +0.9
4,236,365 - AMB_RS19420 0.86 -0.6
4,236,365 - AMB_RS19420 0.86 +0.8
4,236,404 + +2.1
4,236,630 + AMB_RS19425 0.26 -0.6
4,236,630 + AMB_RS19425 0.26 +1.5
4,236,630 + AMB_RS19425 0.26 -4.6
4,236,630 + AMB_RS19425 0.26 -4.2
4,236,630 + AMB_RS19425 0.26 -4.0
4,236,630 + AMB_RS19425 0.26 +0.2
4,236,630 + AMB_RS19425 0.26 -1.0
4,236,630 + AMB_RS19425 0.26 +0.0
4,236,631 - AMB_RS19425 0.26 -2.0
4,236,631 - AMB_RS19425 0.26 +0.4
4,236,631 - AMB_RS19425 0.26 -1.6
4,236,631 - AMB_RS19425 0.26 -3.8
4,236,884 + AMB_RS19425 0.61 +0.7
4,236,885 - AMB_RS19425 0.61 +1.7
4,236,885 - AMB_RS19425 0.61 -1.5
4,236,885 - AMB_RS19425 0.61 -0.4
4,236,943 + AMB_RS19425 0.69 +0.3
4,236,943 + AMB_RS19425 0.69 +0.0
4,236,944 - AMB_RS19425 0.69 -0.4
4,236,944 - AMB_RS19425 0.69 -3.2
4,236,973 + AMB_RS19425 0.73 +0.8
4,236,974 - AMB_RS19425 0.73 -0.6
4,236,998 + AMB_RS19425 0.76 -1.0
4,236,998 + AMB_RS19425 0.76 -1.8
4,236,998 + AMB_RS19425 0.76 +1.0
4,236,998 + AMB_RS19425 0.76 -3.0
4,236,998 + AMB_RS19425 0.76 -2.6
4,236,999 - AMB_RS19425 0.76 +0.1
4,236,999 - AMB_RS19425 0.76 -2.4
4,236,999 - AMB_RS19425 0.76 +1.0
4,237,173 + -5.1
4,237,200 + -3.1
4,237,259 + +2.0
4,237,259 + +1.7
4,237,260 - -1.0
4,237,891 + -1.0
4,237,891 + -0.6
4,237,914 + -3.6
4,237,914 + -0.8

Or see this region's nucleotide sequence