Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19195

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19190 and AMB_RS19195 are separated by 226 nucleotidesAMB_RS19195 and AMB_RS19200 overlap by 1 nucleotides AMB_RS19190: AMB_RS19190 - S-layer family protein, at 4,172,545 to 4,185,714 _RS19190 AMB_RS19195: AMB_RS19195 - tetratricopeptide repeat protein, at 4,185,941 to 4,187,962 _RS19195 AMB_RS19200: AMB_RS19200 - glycosyl transferase, at 4,187,962 to 4,190,037 _RS19200 Position (kb) 4185 4186 4187 4188Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4185.251 kb on + strandat 4185.251 kb on + strandat 4185.251 kb on + strandat 4185.251 kb on + strandat 4185.252 kb on - strandat 4185.252 kb on - strandat 4185.706 kb on + strandat 4185.706 kb on + strandat 4185.722 kb on + strandat 4185.859 kb on + strandat 4185.860 kb on - strandat 4185.860 kb on - strandat 4185.873 kb on + strandat 4185.873 kb on + strandat 4185.873 kb on + strandat 4185.874 kb on - strandat 4186.068 kb on - strandat 4186.109 kb on + strandat 4186.109 kb on + strandat 4186.110 kb on - strandat 4186.110 kb on - strandat 4186.110 kb on - strandat 4186.110 kb on - strandat 4186.110 kb on - strandat 4186.119 kb on - strandat 4186.220 kb on + strand, within AMB_RS19195at 4186.220 kb on + strand, within AMB_RS19195at 4186.220 kb on + strand, within AMB_RS19195at 4186.220 kb on + strand, within AMB_RS19195at 4186.221 kb on - strand, within AMB_RS19195at 4186.221 kb on - strand, within AMB_RS19195at 4186.221 kb on - strand, within AMB_RS19195at 4186.566 kb on - strand, within AMB_RS19195at 4186.697 kb on + strand, within AMB_RS19195at 4186.697 kb on + strand, within AMB_RS19195at 4186.697 kb on + strand, within AMB_RS19195at 4186.697 kb on + strand, within AMB_RS19195at 4186.698 kb on - strand, within AMB_RS19195at 4186.698 kb on - strand, within AMB_RS19195at 4186.698 kb on - strand, within AMB_RS19195at 4186.733 kb on + strand, within AMB_RS19195at 4186.790 kb on + strand, within AMB_RS19195at 4186.793 kb on + strand, within AMB_RS19195at 4186.794 kb on - strand, within AMB_RS19195at 4186.926 kb on + strand, within AMB_RS19195at 4186.926 kb on + strand, within AMB_RS19195at 4186.926 kb on + strand, within AMB_RS19195at 4186.926 kb on + strand, within AMB_RS19195at 4186.926 kb on + strand, within AMB_RS19195at 4186.927 kb on - strand, within AMB_RS19195at 4187.033 kb on + strand, within AMB_RS19195at 4187.033 kb on + strand, within AMB_RS19195at 4187.042 kb on + strand, within AMB_RS19195at 4187.042 kb on + strand, within AMB_RS19195at 4187.042 kb on + strand, within AMB_RS19195at 4187.043 kb on - strand, within AMB_RS19195at 4187.043 kb on - strand, within AMB_RS19195at 4187.043 kb on - strand, within AMB_RS19195at 4187.043 kb on - strand, within AMB_RS19195at 4187.043 kb on - strand, within AMB_RS19195at 4187.087 kb on + strand, within AMB_RS19195at 4187.087 kb on + strand, within AMB_RS19195at 4187.087 kb on + strand, within AMB_RS19195at 4187.087 kb on + strand, within AMB_RS19195at 4187.087 kb on + strand, within AMB_RS19195at 4187.088 kb on - strand, within AMB_RS19195at 4187.088 kb on - strand, within AMB_RS19195at 4187.088 kb on - strand, within AMB_RS19195at 4187.088 kb on - strand, within AMB_RS19195at 4187.088 kb on - strand, within AMB_RS19195at 4187.088 kb on - strand, within AMB_RS19195at 4187.088 kb on - strand, within AMB_RS19195at 4187.088 kb on - strand, within AMB_RS19195at 4187.088 kb on - strand, within AMB_RS19195at 4187.104 kb on - strand, within AMB_RS19195at 4187.104 kb on - strand, within AMB_RS19195at 4187.120 kb on + strand, within AMB_RS19195at 4187.120 kb on + strand, within AMB_RS19195at 4187.121 kb on - strand, within AMB_RS19195at 4187.121 kb on - strand, within AMB_RS19195at 4187.443 kb on + strand, within AMB_RS19195at 4187.443 kb on + strand, within AMB_RS19195at 4187.443 kb on + strand, within AMB_RS19195at 4187.453 kb on + strand, within AMB_RS19195at 4187.733 kb on - strand, within AMB_RS19195at 4187.733 kb on - strand, within AMB_RS19195at 4187.733 kb on - strand, within AMB_RS19195at 4187.801 kb on + strandat 4187.861 kb on + strandat 4187.861 kb on + strandat 4187.862 kb on - strandat 4187.862 kb on - strandat 4187.906 kb on + strandat 4187.907 kb on - strandat 4188.086 kb on - strandat 4188.103 kb on + strandat 4188.103 kb on + strandat 4188.103 kb on + strandat 4188.104 kb on - strandat 4188.104 kb on - strandat 4188.127 kb on + strandat 4188.139 kb on + strandat 4188.145 kb on - strandat 4188.145 kb on - strandat 4188.145 kb on - strandat 4188.145 kb on - strandat 4188.152 kb on + strandat 4188.152 kb on + strandat 4188.152 kb on + strandat 4188.153 kb on - strandat 4188.259 kb on + strand, within AMB_RS19200at 4188.259 kb on + strand, within AMB_RS19200at 4188.260 kb on - strand, within AMB_RS19200at 4188.260 kb on - strand, within AMB_RS19200at 4188.260 kb on - strand, within AMB_RS19200at 4188.260 kb on - strand, within AMB_RS19200at 4188.260 kb on - strand, within AMB_RS19200at 4188.260 kb on - strand, within AMB_RS19200at 4188.349 kb on + strand, within AMB_RS19200at 4188.349 kb on + strand, within AMB_RS19200at 4188.349 kb on + strand, within AMB_RS19200at 4188.349 kb on + strand, within AMB_RS19200at 4188.349 kb on + strand, within AMB_RS19200at 4188.350 kb on - strand, within AMB_RS19200at 4188.350 kb on - strand, within AMB_RS19200at 4188.350 kb on - strand, within AMB_RS19200at 4188.622 kb on + strand, within AMB_RS19200at 4188.622 kb on + strand, within AMB_RS19200at 4188.622 kb on + strand, within AMB_RS19200at 4188.622 kb on + strand, within AMB_RS19200at 4188.622 kb on + strand, within AMB_RS19200at 4188.623 kb on - strand, within AMB_RS19200at 4188.623 kb on - strand, within AMB_RS19200at 4188.623 kb on - strand, within AMB_RS19200at 4188.625 kb on + strand, within AMB_RS19200at 4188.625 kb on + strand, within AMB_RS19200at 4188.625 kb on + strand, within AMB_RS19200at 4188.625 kb on + strand, within AMB_RS19200at 4188.625 kb on + strand, within AMB_RS19200at 4188.626 kb on - strand, within AMB_RS19200at 4188.626 kb on - strand, within AMB_RS19200at 4188.626 kb on - strand, within AMB_RS19200at 4188.626 kb on - strand, within AMB_RS19200at 4188.626 kb on - strand, within AMB_RS19200at 4188.722 kb on - strand, within AMB_RS19200at 4188.733 kb on + strand, within AMB_RS19200at 4188.775 kb on + strand, within AMB_RS19200at 4188.776 kb on - strand, within AMB_RS19200at 4188.776 kb on - strand, within AMB_RS19200at 4188.814 kb on + strand, within AMB_RS19200

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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4,185,251 + +1.7
4,185,251 + +0.1
4,185,251 + -0.6
4,185,251 + +0.8
4,185,252 - +0.1
4,185,252 - +0.5
4,185,706 + -1.0
4,185,706 + +2.1
4,185,722 + -1.5
4,185,859 + +0.4
4,185,860 - +0.9
4,185,860 - -3.4
4,185,873 + +1.0
4,185,873 + -1.0
4,185,873 + +0.5
4,185,874 - +0.8
4,186,068 - +0.0
4,186,109 + +0.0
4,186,109 + +0.5
4,186,110 - -3.5
4,186,110 - -3.3
4,186,110 - +0.0
4,186,110 - -1.8
4,186,110 - +0.9
4,186,119 - +0.3
4,186,220 + AMB_RS19195 0.14 -3.0
4,186,220 + AMB_RS19195 0.14 -2.3
4,186,220 + AMB_RS19195 0.14 +0.6
4,186,220 + AMB_RS19195 0.14 -0.0
4,186,221 - AMB_RS19195 0.14 -0.3
4,186,221 - AMB_RS19195 0.14 -2.2
4,186,221 - AMB_RS19195 0.14 -3.8
4,186,566 - AMB_RS19195 0.31 -2.9
4,186,697 + AMB_RS19195 0.37 +1.2
4,186,697 + AMB_RS19195 0.37 +2.5
4,186,697 + AMB_RS19195 0.37 -1.3
4,186,697 + AMB_RS19195 0.37 -0.5
4,186,698 - AMB_RS19195 0.37 +2.3
4,186,698 - AMB_RS19195 0.37 +1.8
4,186,698 - AMB_RS19195 0.37 -2.7
4,186,733 + AMB_RS19195 0.39 -2.3
4,186,790 + AMB_RS19195 0.42 -1.0
4,186,793 + AMB_RS19195 0.42 -1.0
4,186,794 - AMB_RS19195 0.42 -0.9
4,186,926 + AMB_RS19195 0.49 -2.8
4,186,926 + AMB_RS19195 0.49 +0.6
4,186,926 + AMB_RS19195 0.49 +1.2
4,186,926 + AMB_RS19195 0.49 +0.5
4,186,926 + AMB_RS19195 0.49 -2.0
4,186,927 - AMB_RS19195 0.49 +1.6
4,187,033 + AMB_RS19195 0.54 +1.1
4,187,033 + AMB_RS19195 0.54 +0.6
4,187,042 + AMB_RS19195 0.54 -0.5
4,187,042 + AMB_RS19195 0.54 -0.4
4,187,042 + AMB_RS19195 0.54 +0.4
4,187,043 - AMB_RS19195 0.55 +0.3
4,187,043 - AMB_RS19195 0.55 -2.0
4,187,043 - AMB_RS19195 0.55 -2.3
4,187,043 - AMB_RS19195 0.55 +1.2
4,187,043 - AMB_RS19195 0.55 -2.9
4,187,087 + AMB_RS19195 0.57 +3.0
4,187,087 + AMB_RS19195 0.57 -1.1
4,187,087 + AMB_RS19195 0.57 +0.1
4,187,087 + AMB_RS19195 0.57 -2.7
4,187,087 + AMB_RS19195 0.57 -1.5
4,187,088 - AMB_RS19195 0.57 +1.4
4,187,088 - AMB_RS19195 0.57 +1.4
4,187,088 - AMB_RS19195 0.57 -3.2
4,187,088 - AMB_RS19195 0.57 -3.4
4,187,088 - AMB_RS19195 0.57 +0.4
4,187,088 - AMB_RS19195 0.57 +1.1
4,187,088 - AMB_RS19195 0.57 -2.9
4,187,088 - AMB_RS19195 0.57 +1.0
4,187,088 - AMB_RS19195 0.57 +0.7
4,187,104 - AMB_RS19195 0.58 -2.7
4,187,104 - AMB_RS19195 0.58 +2.0
4,187,120 + AMB_RS19195 0.58 -2.3
4,187,120 + AMB_RS19195 0.58 +0.2
4,187,121 - AMB_RS19195 0.58 +1.4
4,187,121 - AMB_RS19195 0.58 +1.5
4,187,443 + AMB_RS19195 0.74 -3.0
4,187,443 + AMB_RS19195 0.74 +1.0
4,187,443 + AMB_RS19195 0.74 +0.3
4,187,453 + AMB_RS19195 0.75 +1.0
4,187,733 - AMB_RS19195 0.89 +2.0
4,187,733 - AMB_RS19195 0.89 -0.2
4,187,733 - AMB_RS19195 0.89 -3.2
4,187,801 + +0.6
4,187,861 + +0.9
4,187,861 + -1.5
4,187,862 - -0.4
4,187,862 - -1.0
4,187,906 + -4.0
4,187,907 - +0.5
4,188,086 - +0.8
4,188,103 + -0.2
4,188,103 + -1.5
4,188,103 + -0.0
4,188,104 - -2.4
4,188,104 - -4.1
4,188,127 + -4.3
4,188,139 + -2.2
4,188,145 - -4.2
4,188,145 - +1.2
4,188,145 - -2.3
4,188,145 - -1.2
4,188,152 + -0.2
4,188,152 + -2.7
4,188,152 + -0.4
4,188,153 - -0.0
4,188,259 + AMB_RS19200 0.14 -1.8
4,188,259 + AMB_RS19200 0.14 -0.1
4,188,260 - AMB_RS19200 0.14 +0.2
4,188,260 - AMB_RS19200 0.14 -2.0
4,188,260 - AMB_RS19200 0.14 +0.1
4,188,260 - AMB_RS19200 0.14 +0.5
4,188,260 - AMB_RS19200 0.14 +1.9
4,188,260 - AMB_RS19200 0.14 +0.7
4,188,349 + AMB_RS19200 0.19 -0.1
4,188,349 + AMB_RS19200 0.19 +1.5
4,188,349 + AMB_RS19200 0.19 -0.5
4,188,349 + AMB_RS19200 0.19 +0.3
4,188,349 + AMB_RS19200 0.19 -2.0
4,188,350 - AMB_RS19200 0.19 +0.0
4,188,350 - AMB_RS19200 0.19 -1.8
4,188,350 - AMB_RS19200 0.19 -0.8
4,188,622 + AMB_RS19200 0.32 +1.0
4,188,622 + AMB_RS19200 0.32 -3.1
4,188,622 + AMB_RS19200 0.32 -0.1
4,188,622 + AMB_RS19200 0.32 -2.1
4,188,622 + AMB_RS19200 0.32 +1.4
4,188,623 - AMB_RS19200 0.32 -0.7
4,188,623 - AMB_RS19200 0.32 -1.0
4,188,623 - AMB_RS19200 0.32 +2.1
4,188,625 + AMB_RS19200 0.32 +2.6
4,188,625 + AMB_RS19200 0.32 +0.2
4,188,625 + AMB_RS19200 0.32 -2.4
4,188,625 + AMB_RS19200 0.32 -2.9
4,188,625 + AMB_RS19200 0.32 -1.3
4,188,626 - AMB_RS19200 0.32 +0.2
4,188,626 - AMB_RS19200 0.32 +0.6
4,188,626 - AMB_RS19200 0.32 -0.7
4,188,626 - AMB_RS19200 0.32 -1.5
4,188,626 - AMB_RS19200 0.32 +0.7
4,188,722 - AMB_RS19200 0.37 -3.0
4,188,733 + AMB_RS19200 0.37 -1.3
4,188,775 + AMB_RS19200 0.39 -1.8
4,188,776 - AMB_RS19200 0.39 -0.8
4,188,776 - AMB_RS19200 0.39 +3.7
4,188,814 + AMB_RS19200 0.41 +1.0

Or see this region's nucleotide sequence