Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19175

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19170 and AMB_RS19175 are separated by 28 nucleotidesAMB_RS19175 and AMB_RS19180 overlap by 1 nucleotides AMB_RS19170: AMB_RS19170 - 3-beta hydroxysteroid dehydrogenase, at 4,167,561 to 4,168,631 _RS19170 AMB_RS19175: AMB_RS19175 - NAD-dependent epimerase, at 4,168,660 to 4,169,742 _RS19175 AMB_RS19180: AMB_RS19180 - glycosyltransferase family 1 protein, at 4,169,742 to 4,170,956 _RS19180 Position (kb) 4168 4169 4170Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4167.828 kb on + strand, within AMB_RS19170at 4167.829 kb on - strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.846 kb on + strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.847 kb on - strand, within AMB_RS19170at 4167.879 kb on - strand, within AMB_RS19170at 4167.891 kb on + strand, within AMB_RS19170at 4167.892 kb on - strand, within AMB_RS19170at 4167.892 kb on - strand, within AMB_RS19170at 4167.942 kb on + strand, within AMB_RS19170at 4168.080 kb on + strand, within AMB_RS19170at 4168.080 kb on + strand, within AMB_RS19170at 4168.081 kb on - strand, within AMB_RS19170at 4168.081 kb on - strand, within AMB_RS19170at 4168.081 kb on - strand, within AMB_RS19170at 4168.081 kb on - strand, within AMB_RS19170at 4168.081 kb on - strand, within AMB_RS19170at 4168.081 kb on - strand, within AMB_RS19170at 4168.122 kb on + strand, within AMB_RS19170at 4168.122 kb on + strand, within AMB_RS19170at 4168.123 kb on - strand, within AMB_RS19170at 4168.134 kb on + strand, within AMB_RS19170at 4168.134 kb on + strand, within AMB_RS19170at 4168.135 kb on - strand, within AMB_RS19170at 4168.135 kb on - strand, within AMB_RS19170at 4168.135 kb on - strand, within AMB_RS19170at 4168.257 kb on + strand, within AMB_RS19170at 4168.257 kb on + strand, within AMB_RS19170at 4168.258 kb on - strand, within AMB_RS19170at 4168.317 kb on + strand, within AMB_RS19170at 4168.318 kb on - strand, within AMB_RS19170at 4168.318 kb on - strand, within AMB_RS19170at 4168.318 kb on - strand, within AMB_RS19170at 4168.318 kb on - strand, within AMB_RS19170at 4168.318 kb on - strand, within AMB_RS19170at 4168.497 kb on + strand, within AMB_RS19170at 4168.497 kb on + strand, within AMB_RS19170at 4168.498 kb on - strand, within AMB_RS19170at 4168.498 kb on - strand, within AMB_RS19170at 4168.498 kb on - strand, within AMB_RS19170at 4168.498 kb on - strand, within AMB_RS19170at 4168.498 kb on - strand, within AMB_RS19170at 4168.500 kb on + strand, within AMB_RS19170at 4168.500 kb on + strand, within AMB_RS19170at 4168.500 kb on + strand, within AMB_RS19170at 4168.500 kb on + strand, within AMB_RS19170at 4168.501 kb on - strand, within AMB_RS19170at 4168.501 kb on - strand, within AMB_RS19170at 4168.501 kb on - strand, within AMB_RS19170at 4168.501 kb on - strand, within AMB_RS19170at 4168.501 kb on - strand, within AMB_RS19170at 4168.565 kb on - strandat 4168.565 kb on - strandat 4168.837 kb on + strand, within AMB_RS19175at 4168.837 kb on + strand, within AMB_RS19175at 4168.837 kb on + strand, within AMB_RS19175at 4169.074 kb on + strand, within AMB_RS19175at 4169.075 kb on - strand, within AMB_RS19175at 4169.210 kb on + strand, within AMB_RS19175at 4169.210 kb on + strand, within AMB_RS19175at 4169.245 kb on + strand, within AMB_RS19175at 4169.245 kb on + strand, within AMB_RS19175at 4169.245 kb on + strand, within AMB_RS19175at 4169.341 kb on + strand, within AMB_RS19175at 4169.375 kb on - strand, within AMB_RS19175at 4169.375 kb on - strand, within AMB_RS19175at 4169.376 kb on + strand, within AMB_RS19175at 4169.376 kb on + strand, within AMB_RS19175at 4169.376 kb on + strand, within AMB_RS19175at 4169.376 kb on + strand, within AMB_RS19175at 4169.376 kb on + strand, within AMB_RS19175at 4169.376 kb on + strand, within AMB_RS19175at 4169.377 kb on - strand, within AMB_RS19175at 4169.377 kb on - strand, within AMB_RS19175at 4169.389 kb on + strand, within AMB_RS19175at 4169.390 kb on - strand, within AMB_RS19175at 4169.390 kb on - strand, within AMB_RS19175at 4169.482 kb on + strand, within AMB_RS19175at 4169.482 kb on + strand, within AMB_RS19175at 4169.482 kb on + strand, within AMB_RS19175at 4169.482 kb on + strand, within AMB_RS19175at 4169.483 kb on - strand, within AMB_RS19175at 4169.483 kb on - strand, within AMB_RS19175at 4169.575 kb on + strand, within AMB_RS19175at 4169.575 kb on + strand, within AMB_RS19175at 4169.576 kb on - strand, within AMB_RS19175at 4169.576 kb on - strand, within AMB_RS19175at 4169.576 kb on - strand, within AMB_RS19175at 4169.576 kb on - strand, within AMB_RS19175at 4169.593 kb on - strand, within AMB_RS19175at 4169.604 kb on + strand, within AMB_RS19175at 4169.604 kb on + strand, within AMB_RS19175at 4169.604 kb on + strand, within AMB_RS19175at 4169.604 kb on + strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.605 kb on - strand, within AMB_RS19175at 4169.665 kb on + strandat 4169.666 kb on - strandat 4169.666 kb on - strandat 4169.666 kb on - strandat 4169.751 kb on + strandat 4169.751 kb on + strandat 4169.752 kb on - strandat 4169.752 kb on - strandat 4169.775 kb on - strandat 4169.856 kb on + strandat 4169.856 kb on + strandat 4169.918 kb on + strand, within AMB_RS19180at 4169.918 kb on + strand, within AMB_RS19180at 4169.918 kb on + strand, within AMB_RS19180at 4169.919 kb on - strand, within AMB_RS19180at 4169.919 kb on - strand, within AMB_RS19180at 4169.923 kb on - strand, within AMB_RS19180at 4169.931 kb on + strand, within AMB_RS19180at 4169.931 kb on + strand, within AMB_RS19180at 4169.931 kb on + strand, within AMB_RS19180at 4169.931 kb on + strand, within AMB_RS19180at 4169.932 kb on - strand, within AMB_RS19180at 4169.932 kb on - strand, within AMB_RS19180at 4169.932 kb on - strand, within AMB_RS19180at 4169.932 kb on - strand, within AMB_RS19180at 4169.932 kb on - strand, within AMB_RS19180at 4169.932 kb on - strand, within AMB_RS19180at 4170.039 kb on + strand, within AMB_RS19180at 4170.039 kb on + strand, within AMB_RS19180at 4170.039 kb on + strand, within AMB_RS19180at 4170.039 kb on + strand, within AMB_RS19180at 4170.040 kb on - strand, within AMB_RS19180at 4170.040 kb on - strand, within AMB_RS19180at 4170.040 kb on - strand, within AMB_RS19180at 4170.040 kb on - strand, within AMB_RS19180at 4170.040 kb on - strand, within AMB_RS19180at 4170.231 kb on + strand, within AMB_RS19180at 4170.231 kb on + strand, within AMB_RS19180at 4170.231 kb on + strand, within AMB_RS19180at 4170.317 kb on - strand, within AMB_RS19180at 4170.317 kb on - strand, within AMB_RS19180at 4170.415 kb on + strand, within AMB_RS19180at 4170.415 kb on + strand, within AMB_RS19180at 4170.416 kb on - strand, within AMB_RS19180at 4170.416 kb on - strand, within AMB_RS19180at 4170.416 kb on - strand, within AMB_RS19180at 4170.492 kb on - strand, within AMB_RS19180at 4170.510 kb on - strand, within AMB_RS19180at 4170.658 kb on - strand, within AMB_RS19180at 4170.658 kb on - strand, within AMB_RS19180at 4170.658 kb on - strand, within AMB_RS19180at 4170.684 kb on + strand, within AMB_RS19180

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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4,167,828 + AMB_RS19170 0.25 -0.4
4,167,829 - AMB_RS19170 0.25 +0.7
4,167,846 + AMB_RS19170 0.27 -1.0
4,167,846 + AMB_RS19170 0.27 +0.2
4,167,846 + AMB_RS19170 0.27 -2.4
4,167,846 + AMB_RS19170 0.27 -3.5
4,167,846 + AMB_RS19170 0.27 +0.9
4,167,847 - AMB_RS19170 0.27 +1.7
4,167,847 - AMB_RS19170 0.27 -2.4
4,167,847 - AMB_RS19170 0.27 +0.2
4,167,847 - AMB_RS19170 0.27 +1.7
4,167,847 - AMB_RS19170 0.27 -3.7
4,167,847 - AMB_RS19170 0.27 -2.8
4,167,847 - AMB_RS19170 0.27 +3.1
4,167,847 - AMB_RS19170 0.27 +1.1
4,167,879 - AMB_RS19170 0.30 +0.7
4,167,891 + AMB_RS19170 0.31 +0.0
4,167,892 - AMB_RS19170 0.31 +0.3
4,167,892 - AMB_RS19170 0.31 -2.7
4,167,942 + AMB_RS19170 0.36 -3.7
4,168,080 + AMB_RS19170 0.48 -2.0
4,168,080 + AMB_RS19170 0.48 -3.9
4,168,081 - AMB_RS19170 0.49 -3.1
4,168,081 - AMB_RS19170 0.49 +0.9
4,168,081 - AMB_RS19170 0.49 -1.5
4,168,081 - AMB_RS19170 0.49 -0.7
4,168,081 - AMB_RS19170 0.49 +0.7
4,168,081 - AMB_RS19170 0.49 -3.0
4,168,122 + AMB_RS19170 0.52 -0.5
4,168,122 + AMB_RS19170 0.52 -0.5
4,168,123 - AMB_RS19170 0.52 -2.9
4,168,134 + AMB_RS19170 0.54 -1.8
4,168,134 + AMB_RS19170 0.54 -0.4
4,168,135 - AMB_RS19170 0.54 -0.0
4,168,135 - AMB_RS19170 0.54 +0.6
4,168,135 - AMB_RS19170 0.54 +0.7
4,168,257 + AMB_RS19170 0.65 +0.0
4,168,257 + AMB_RS19170 0.65 -2.0
4,168,258 - AMB_RS19170 0.65 -0.6
4,168,317 + AMB_RS19170 0.71 -3.1
4,168,318 - AMB_RS19170 0.71 +2.4
4,168,318 - AMB_RS19170 0.71 +0.3
4,168,318 - AMB_RS19170 0.71 +1.5
4,168,318 - AMB_RS19170 0.71 -1.4
4,168,318 - AMB_RS19170 0.71 -3.8
4,168,497 + AMB_RS19170 0.87 +0.3
4,168,497 + AMB_RS19170 0.87 +1.8
4,168,498 - AMB_RS19170 0.87 +1.1
4,168,498 - AMB_RS19170 0.87 -1.5
4,168,498 - AMB_RS19170 0.87 -0.1
4,168,498 - AMB_RS19170 0.87 -0.5
4,168,498 - AMB_RS19170 0.87 +1.1
4,168,500 + AMB_RS19170 0.88 -0.1
4,168,500 + AMB_RS19170 0.88 +0.1
4,168,500 + AMB_RS19170 0.88 -3.8
4,168,500 + AMB_RS19170 0.88 -2.1
4,168,501 - AMB_RS19170 0.88 -0.4
4,168,501 - AMB_RS19170 0.88 +1.7
4,168,501 - AMB_RS19170 0.88 +1.2
4,168,501 - AMB_RS19170 0.88 +0.4
4,168,501 - AMB_RS19170 0.88 -1.0
4,168,565 - -2.0
4,168,565 - -0.9
4,168,837 + AMB_RS19175 0.16 -3.0
4,168,837 + AMB_RS19175 0.16 -0.1
4,168,837 + AMB_RS19175 0.16 -0.0
4,169,074 + AMB_RS19175 0.38 +0.2
4,169,075 - AMB_RS19175 0.38 +2.9
4,169,210 + AMB_RS19175 0.51 -2.9
4,169,210 + AMB_RS19175 0.51 +1.0
4,169,245 + AMB_RS19175 0.54 +1.0
4,169,245 + AMB_RS19175 0.54 +0.7
4,169,245 + AMB_RS19175 0.54 +1.0
4,169,341 + AMB_RS19175 0.63 -0.6
4,169,375 - AMB_RS19175 0.66 +0.8
4,169,375 - AMB_RS19175 0.66 -1.3
4,169,376 + AMB_RS19175 0.66 -2.0
4,169,376 + AMB_RS19175 0.66 -0.2
4,169,376 + AMB_RS19175 0.66 -0.4
4,169,376 + AMB_RS19175 0.66 -2.0
4,169,376 + AMB_RS19175 0.66 +0.0
4,169,376 + AMB_RS19175 0.66 -0.7
4,169,377 - AMB_RS19175 0.66 -2.0
4,169,377 - AMB_RS19175 0.66 -0.1
4,169,389 + AMB_RS19175 0.67 -0.0
4,169,390 - AMB_RS19175 0.67 -0.2
4,169,390 - AMB_RS19175 0.67 -0.8
4,169,482 + AMB_RS19175 0.76 -2.1
4,169,482 + AMB_RS19175 0.76 -3.0
4,169,482 + AMB_RS19175 0.76 +0.4
4,169,482 + AMB_RS19175 0.76 -0.3
4,169,483 - AMB_RS19175 0.76 -3.0
4,169,483 - AMB_RS19175 0.76 +1.2
4,169,575 + AMB_RS19175 0.84 -4.0
4,169,575 + AMB_RS19175 0.84 +0.1
4,169,576 - AMB_RS19175 0.85 -2.9
4,169,576 - AMB_RS19175 0.85 -0.3
4,169,576 - AMB_RS19175 0.85 -0.4
4,169,576 - AMB_RS19175 0.85 +0.1
4,169,593 - AMB_RS19175 0.86 +0.3
4,169,604 + AMB_RS19175 0.87 -2.5
4,169,604 + AMB_RS19175 0.87 -3.0
4,169,604 + AMB_RS19175 0.87 +0.1
4,169,604 + AMB_RS19175 0.87 -2.4
4,169,605 - AMB_RS19175 0.87 -2.8
4,169,605 - AMB_RS19175 0.87 -0.0
4,169,605 - AMB_RS19175 0.87 -2.5
4,169,605 - AMB_RS19175 0.87 -2.0
4,169,605 - AMB_RS19175 0.87 -2.0
4,169,605 - AMB_RS19175 0.87 -1.8
4,169,605 - AMB_RS19175 0.87 -3.2
4,169,665 + -3.8
4,169,666 - -0.5
4,169,666 - +0.3
4,169,666 - -4.2
4,169,751 + -2.1
4,169,751 + -2.1
4,169,752 - -0.5
4,169,752 - -1.5
4,169,775 - -0.3
4,169,856 + +2.7
4,169,856 + +0.6
4,169,918 + AMB_RS19180 0.14 -1.6
4,169,918 + AMB_RS19180 0.14 +0.7
4,169,918 + AMB_RS19180 0.14 -0.5
4,169,919 - AMB_RS19180 0.15 +1.0
4,169,919 - AMB_RS19180 0.15 +0.3
4,169,923 - AMB_RS19180 0.15 +0.5
4,169,931 + AMB_RS19180 0.16 -3.0
4,169,931 + AMB_RS19180 0.16 +0.7
4,169,931 + AMB_RS19180 0.16 +0.1
4,169,931 + AMB_RS19180 0.16 -2.4
4,169,932 - AMB_RS19180 0.16 -1.7
4,169,932 - AMB_RS19180 0.16 -1.0
4,169,932 - AMB_RS19180 0.16 -0.3
4,169,932 - AMB_RS19180 0.16 -0.6
4,169,932 - AMB_RS19180 0.16 -4.0
4,169,932 - AMB_RS19180 0.16 +1.4
4,170,039 + AMB_RS19180 0.24 +1.9
4,170,039 + AMB_RS19180 0.24 +2.6
4,170,039 + AMB_RS19180 0.24 -0.4
4,170,039 + AMB_RS19180 0.24 -1.1
4,170,040 - AMB_RS19180 0.25 -1.8
4,170,040 - AMB_RS19180 0.25 -0.5
4,170,040 - AMB_RS19180 0.25 -2.1
4,170,040 - AMB_RS19180 0.25 +1.0
4,170,040 - AMB_RS19180 0.25 +2.0
4,170,231 + AMB_RS19180 0.40 +0.0
4,170,231 + AMB_RS19180 0.40 +0.2
4,170,231 + AMB_RS19180 0.40 -3.0
4,170,317 - AMB_RS19180 0.47 +0.1
4,170,317 - AMB_RS19180 0.47 +0.0
4,170,415 + AMB_RS19180 0.55 -0.2
4,170,415 + AMB_RS19180 0.55 -0.6
4,170,416 - AMB_RS19180 0.55 -2.4
4,170,416 - AMB_RS19180 0.55 -2.4
4,170,416 - AMB_RS19180 0.55 +2.2
4,170,492 - AMB_RS19180 0.62 +1.7
4,170,510 - AMB_RS19180 0.63 -1.8
4,170,658 - AMB_RS19180 0.75 -0.4
4,170,658 - AMB_RS19180 0.75 -1.3
4,170,658 - AMB_RS19180 0.75 +1.4
4,170,684 + AMB_RS19180 0.78 -1.5

Or see this region's nucleotide sequence