Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS18980

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS18970 and AMB_RS18975 are separated by 82 nucleotidesAMB_RS18975 and AMB_RS18980 are separated by 84 nucleotidesAMB_RS18980 and AMB_RS18985 overlap by 4 nucleotidesAMB_RS18985 and AMB_RS18990 are separated by 2 nucleotides AMB_RS18970: AMB_RS18970 - tetratricopeptide repeat protein, at 4,123,449 to 4,124,252 _RS18970 AMB_RS18975: AMB_RS18975 - hypothetical protein, at 4,124,335 to 4,124,787 _RS18975 AMB_RS18980: AMB_RS18980 - pilus assembly protein, at 4,124,872 to 4,125,399 _RS18980 AMB_RS18985: AMB_RS18985 - pilus assembly protein, at 4,125,396 to 4,125,935 _RS18985 AMB_RS18990: AMB_RS18990 - Flp pilus assembly protein TadG, at 4,125,938 to 4,127,332 _RS18990 Position (kb) 4124 4125 4126Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4123.873 kb on + strand, within AMB_RS18970at 4123.873 kb on + strand, within AMB_RS18970at 4123.873 kb on + strand, within AMB_RS18970at 4123.873 kb on + strand, within AMB_RS18970at 4123.873 kb on + strand, within AMB_RS18970at 4123.873 kb on + strand, within AMB_RS18970at 4123.873 kb on + strand, within AMB_RS18970at 4123.873 kb on + strand, within AMB_RS18970at 4123.970 kb on - strand, within AMB_RS18970at 4123.970 kb on - strand, within AMB_RS18970at 4124.026 kb on + strand, within AMB_RS18970at 4124.026 kb on + strand, within AMB_RS18970at 4124.026 kb on + strand, within AMB_RS18970at 4124.026 kb on + strand, within AMB_RS18970at 4124.269 kb on + strandat 4124.269 kb on + strandat 4124.269 kb on + strandat 4124.297 kb on + strandat 4124.297 kb on + strandat 4124.297 kb on + strandat 4124.297 kb on + strandat 4124.297 kb on + strandat 4124.298 kb on - strandat 4124.298 kb on - strandat 4124.298 kb on - strandat 4124.298 kb on - strandat 4124.298 kb on - strandat 4124.298 kb on - strandat 4124.298 kb on - strandat 4124.298 kb on - strandat 4124.651 kb on - strand, within AMB_RS18975at 4124.753 kb on - strandat 4124.753 kb on - strandat 4124.753 kb on - strandat 4124.753 kb on - strandat 4124.820 kb on - strandat 4124.842 kb on + strandat 4124.842 kb on + strandat 4124.842 kb on + strandat 4124.842 kb on + strandat 4124.842 kb on + strandat 4124.843 kb on - strandat 4124.843 kb on - strandat 4124.942 kb on - strand, within AMB_RS18980at 4125.137 kb on - strand, within AMB_RS18980at 4125.289 kb on + strand, within AMB_RS18980at 4125.289 kb on + strand, within AMB_RS18980at 4125.289 kb on + strand, within AMB_RS18980at 4125.290 kb on - strand, within AMB_RS18980at 4125.290 kb on - strand, within AMB_RS18980at 4125.290 kb on - strand, within AMB_RS18980at 4125.391 kb on + strandat 4125.391 kb on + strandat 4125.392 kb on - strandat 4125.392 kb on - strandat 4125.528 kb on + strand, within AMB_RS18985at 4125.528 kb on + strand, within AMB_RS18985at 4125.528 kb on + strand, within AMB_RS18985at 4125.528 kb on + strand, within AMB_RS18985at 4125.528 kb on + strand, within AMB_RS18985at 4125.528 kb on + strand, within AMB_RS18985at 4125.529 kb on - strand, within AMB_RS18985at 4125.529 kb on - strand, within AMB_RS18985at 4125.529 kb on - strand, within AMB_RS18985at 4125.529 kb on - strand, within AMB_RS18985at 4125.693 kb on + strand, within AMB_RS18985at 4125.693 kb on + strand, within AMB_RS18985at 4125.694 kb on - strand, within AMB_RS18985at 4125.822 kb on + strand, within AMB_RS18985at 4125.822 kb on + strand, within AMB_RS18985at 4125.822 kb on + strand, within AMB_RS18985at 4125.823 kb on - strand, within AMB_RS18985at 4125.823 kb on - strand, within AMB_RS18985at 4125.823 kb on - strand, within AMB_RS18985at 4125.823 kb on - strand, within AMB_RS18985at 4125.823 kb on - strand, within AMB_RS18985at 4125.823 kb on - strand, within AMB_RS18985at 4125.824 kb on + strand, within AMB_RS18985at 4125.825 kb on - strand, within AMB_RS18985at 4125.825 kb on - strand, within AMB_RS18985at 4125.882 kb on + strandat 4125.882 kb on + strandat 4125.883 kb on - strandat 4125.883 kb on - strandat 4125.883 kb on - strandat 4125.884 kb on + strandat 4125.885 kb on - strandat 4126.061 kb on + strandat 4126.178 kb on + strand, within AMB_RS18990at 4126.179 kb on - strand, within AMB_RS18990

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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4,123,873 + AMB_RS18970 0.53 -4.0
4,123,873 + AMB_RS18970 0.53 -0.5
4,123,873 + AMB_RS18970 0.53 +0.5
4,123,873 + AMB_RS18970 0.53 +0.9
4,123,873 + AMB_RS18970 0.53 -0.5
4,123,873 + AMB_RS18970 0.53 +0.5
4,123,873 + AMB_RS18970 0.53 -0.5
4,123,873 + AMB_RS18970 0.53 -3.7
4,123,970 - AMB_RS18970 0.65 +1.0
4,123,970 - AMB_RS18970 0.65 -0.7
4,124,026 + AMB_RS18970 0.72 -1.0
4,124,026 + AMB_RS18970 0.72 -3.1
4,124,026 + AMB_RS18970 0.72 +0.4
4,124,026 + AMB_RS18970 0.72 +0.9
4,124,269 + -2.4
4,124,269 + -0.4
4,124,269 + +1.2
4,124,297 + +2.0
4,124,297 + +1.4
4,124,297 + +0.4
4,124,297 + +0.0
4,124,297 + -2.3
4,124,298 - -2.0
4,124,298 - -0.5
4,124,298 - -0.0
4,124,298 - +0.8
4,124,298 - -2.3
4,124,298 - -1.5
4,124,298 - +0.5
4,124,298 - +1.6
4,124,651 - AMB_RS18975 0.70 -0.6
4,124,753 - -2.1
4,124,753 - +0.0
4,124,753 - -0.6
4,124,753 - +0.6
4,124,820 - -0.4
4,124,842 + +0.0
4,124,842 + -2.3
4,124,842 + +1.2
4,124,842 + +0.3
4,124,842 + +1.0
4,124,843 - -0.5
4,124,843 - -0.0
4,124,942 - AMB_RS18980 0.13 -2.0
4,125,137 - AMB_RS18980 0.50 -3.6
4,125,289 + AMB_RS18980 0.79 -2.0
4,125,289 + AMB_RS18980 0.79 -0.4
4,125,289 + AMB_RS18980 0.79 -2.0
4,125,290 - AMB_RS18980 0.79 -1.8
4,125,290 - AMB_RS18980 0.79 +0.3
4,125,290 - AMB_RS18980 0.79 -3.2
4,125,391 + -3.0
4,125,391 + -2.0
4,125,392 - -1.3
4,125,392 - -3.7
4,125,528 + AMB_RS18985 0.24 -0.1
4,125,528 + AMB_RS18985 0.24 -0.2
4,125,528 + AMB_RS18985 0.24 +0.4
4,125,528 + AMB_RS18985 0.24 +0.1
4,125,528 + AMB_RS18985 0.24 -0.3
4,125,528 + AMB_RS18985 0.24 +0.6
4,125,529 - AMB_RS18985 0.25 -0.4
4,125,529 - AMB_RS18985 0.25 -1.1
4,125,529 - AMB_RS18985 0.25 -2.3
4,125,529 - AMB_RS18985 0.25 +1.9
4,125,693 + AMB_RS18985 0.55 +0.0
4,125,693 + AMB_RS18985 0.55 -2.9
4,125,694 - AMB_RS18985 0.55 -0.1
4,125,822 + AMB_RS18985 0.79 +0.4
4,125,822 + AMB_RS18985 0.79 -0.3
4,125,822 + AMB_RS18985 0.79 -3.0
4,125,823 - AMB_RS18985 0.79 +0.0
4,125,823 - AMB_RS18985 0.79 -2.0
4,125,823 - AMB_RS18985 0.79 -2.3
4,125,823 - AMB_RS18985 0.79 +0.1
4,125,823 - AMB_RS18985 0.79 -1.0
4,125,823 - AMB_RS18985 0.79 -2.1
4,125,824 + AMB_RS18985 0.79 +0.1
4,125,825 - AMB_RS18985 0.79 -3.2
4,125,825 - AMB_RS18985 0.79 -0.4
4,125,882 + +1.2
4,125,882 + -2.9
4,125,883 - +1.8
4,125,883 - -0.4
4,125,883 - +0.8
4,125,884 + +1.1
4,125,885 - -0.9
4,126,061 + +1.0
4,126,178 + AMB_RS18990 0.17 -2.7
4,126,179 - AMB_RS18990 0.17 -1.1

Or see this region's nucleotide sequence