Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16095

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS16080 and AMB_RS16085 are separated by 20 nucleotidesAMB_RS16085 and AMB_RS16090 are separated by 19 nucleotidesAMB_RS16090 and AMB_RS16095 are separated by 27 nucleotidesAMB_RS16095 and AMB_RS16100 are separated by 128 nucleotides AMB_RS16080: AMB_RS16080 - tRNA-Glu, at 3,449,745 to 3,449,820 _RS16080 AMB_RS16085: AMB_RS16085 - Mov34/MPN/PAD-1, at 3,449,841 to 3,450,311 _RS16085 AMB_RS16090: AMB_RS16090 - hypothetical protein, at 3,450,331 to 3,450,660 _RS16090 AMB_RS16095: AMB_RS16095 - RluA family pseudouridine synthase, at 3,450,688 to 3,451,671 _RS16095 AMB_RS16100: AMB_RS16100 - RNA polymerase sigma factor RpoH, at 3,451,800 to 3,452,690 _RS16100 Position (kb) 3450 3451 3452Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 3449.800 kb on - strand, within AMB_RS16080at 3449.800 kb on - strand, within AMB_RS16080at 3449.800 kb on - strand, within AMB_RS16080at 3449.807 kb on + strand, within AMB_RS16080at 3449.808 kb on - strand, within AMB_RS16080at 3449.842 kb on + strandat 3449.843 kb on - strandat 3450.851 kb on + strand, within AMB_RS16095at 3450.958 kb on + strand, within AMB_RS16095at 3450.958 kb on + strand, within AMB_RS16095at 3450.958 kb on + strand, within AMB_RS16095at 3450.958 kb on + strand, within AMB_RS16095at 3450.958 kb on + strand, within AMB_RS16095at 3450.958 kb on + strand, within AMB_RS16095at 3450.959 kb on - strand, within AMB_RS16095at 3450.959 kb on - strand, within AMB_RS16095at 3450.959 kb on - strand, within AMB_RS16095at 3450.959 kb on - strand, within AMB_RS16095at 3450.959 kb on - strand, within AMB_RS16095at 3450.959 kb on - strand, within AMB_RS16095at 3450.959 kb on - strand, within AMB_RS16095at 3450.959 kb on - strand, within AMB_RS16095at 3450.959 kb on - strand, within AMB_RS16095at 3451.219 kb on + strand, within AMB_RS16095at 3451.219 kb on + strand, within AMB_RS16095at 3451.219 kb on + strand, within AMB_RS16095at 3451.219 kb on + strand, within AMB_RS16095at 3451.220 kb on - strand, within AMB_RS16095at 3451.220 kb on - strand, within AMB_RS16095at 3451.220 kb on - strand, within AMB_RS16095at 3451.220 kb on - strand, within AMB_RS16095at 3451.220 kb on - strand, within AMB_RS16095at 3451.275 kb on + strand, within AMB_RS16095at 3451.275 kb on + strand, within AMB_RS16095at 3451.276 kb on - strand, within AMB_RS16095at 3451.276 kb on - strand, within AMB_RS16095at 3451.437 kb on + strand, within AMB_RS16095at 3451.437 kb on + strand, within AMB_RS16095at 3451.437 kb on + strand, within AMB_RS16095at 3451.437 kb on + strand, within AMB_RS16095at 3451.437 kb on + strand, within AMB_RS16095at 3451.437 kb on + strand, within AMB_RS16095at 3451.437 kb on + strand, within AMB_RS16095at 3451.437 kb on + strand, within AMB_RS16095at 3451.437 kb on + strand, within AMB_RS16095at 3451.437 kb on + strand, within AMB_RS16095at 3451.437 kb on + strand, within AMB_RS16095at 3451.437 kb on + strand, within AMB_RS16095at 3451.438 kb on - strand, within AMB_RS16095at 3451.438 kb on - strand, within AMB_RS16095at 3451.438 kb on - strand, within AMB_RS16095at 3451.438 kb on - strand, within AMB_RS16095at 3451.438 kb on - strand, within AMB_RS16095at 3451.438 kb on - strand, within AMB_RS16095at 3451.438 kb on - strand, within AMB_RS16095at 3451.438 kb on - strand, within AMB_RS16095at 3451.438 kb on - strand, within AMB_RS16095at 3451.438 kb on - strand, within AMB_RS16095at 3451.438 kb on - strand, within AMB_RS16095at 3451.438 kb on - strand, within AMB_RS16095at 3451.438 kb on - strand, within AMB_RS16095at 3451.438 kb on - strand, within AMB_RS16095at 3451.438 kb on - strand, within AMB_RS16095at 3451.477 kb on + strand, within AMB_RS16095at 3451.477 kb on + strand, within AMB_RS16095at 3451.477 kb on + strand, within AMB_RS16095at 3451.477 kb on + strand, within AMB_RS16095at 3451.477 kb on + strand, within AMB_RS16095at 3451.477 kb on + strand, within AMB_RS16095at 3451.477 kb on + strand, within AMB_RS16095at 3451.477 kb on + strand, within AMB_RS16095at 3451.478 kb on - strand, within AMB_RS16095at 3451.478 kb on - strand, within AMB_RS16095at 3451.478 kb on - strand, within AMB_RS16095at 3451.478 kb on - strand, within AMB_RS16095at 3451.478 kb on - strand, within AMB_RS16095at 3451.478 kb on - strand, within AMB_RS16095at 3451.478 kb on - strand, within AMB_RS16095at 3451.511 kb on + strand, within AMB_RS16095at 3451.512 kb on - strand, within AMB_RS16095at 3451.567 kb on + strand, within AMB_RS16095at 3451.567 kb on + strand, within AMB_RS16095at 3451.568 kb on - strand, within AMB_RS16095at 3451.568 kb on - strand, within AMB_RS16095at 3451.568 kb on - strand, within AMB_RS16095at 3451.568 kb on - strand, within AMB_RS16095at 3451.568 kb on - strand, within AMB_RS16095at 3451.568 kb on - strand, within AMB_RS16095at 3451.571 kb on + strand, within AMB_RS16095at 3451.571 kb on + strand, within AMB_RS16095at 3451.590 kb on + strandat 3451.591 kb on - strandat 3451.636 kb on - strandat 3451.682 kb on + strandat 3451.699 kb on - strandat 3451.902 kb on + strand, within AMB_RS16100at 3451.902 kb on + strand, within AMB_RS16100at 3451.903 kb on - strand, within AMB_RS16100at 3451.903 kb on - strand, within AMB_RS16100at 3451.903 kb on - strand, within AMB_RS16100at 3452.001 kb on + strand, within AMB_RS16100at 3452.109 kb on + strand, within AMB_RS16100at 3452.109 kb on + strand, within AMB_RS16100at 3452.145 kb on + strand, within AMB_RS16100at 3452.145 kb on + strand, within AMB_RS16100at 3452.145 kb on + strand, within AMB_RS16100at 3452.146 kb on - strand, within AMB_RS16100at 3452.146 kb on - strand, within AMB_RS16100

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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3,449,800 - AMB_RS16080 0.72 -1.0
3,449,800 - AMB_RS16080 0.72 -2.3
3,449,800 - AMB_RS16080 0.72 -4.1
3,449,807 + AMB_RS16080 0.82 -2.6
3,449,808 - AMB_RS16080 0.83 -0.8
3,449,842 + -2.7
3,449,843 - -0.2
3,450,851 + AMB_RS16095 0.17 +0.6
3,450,958 + AMB_RS16095 0.27 +0.0
3,450,958 + AMB_RS16095 0.27 -4.0
3,450,958 + AMB_RS16095 0.27 -1.1
3,450,958 + AMB_RS16095 0.27 -0.4
3,450,958 + AMB_RS16095 0.27 -0.4
3,450,958 + AMB_RS16095 0.27 -3.4
3,450,959 - AMB_RS16095 0.28 -3.3
3,450,959 - AMB_RS16095 0.28 +0.7
3,450,959 - AMB_RS16095 0.28 -0.5
3,450,959 - AMB_RS16095 0.28 -4.4
3,450,959 - AMB_RS16095 0.28 -0.1
3,450,959 - AMB_RS16095 0.28 +0.1
3,450,959 - AMB_RS16095 0.28 +0.5
3,450,959 - AMB_RS16095 0.28 +4.2
3,450,959 - AMB_RS16095 0.28 -0.4
3,451,219 + AMB_RS16095 0.54 -0.6
3,451,219 + AMB_RS16095 0.54 +0.6
3,451,219 + AMB_RS16095 0.54 +0.8
3,451,219 + AMB_RS16095 0.54 +0.1
3,451,220 - AMB_RS16095 0.54 +0.8
3,451,220 - AMB_RS16095 0.54 +0.4
3,451,220 - AMB_RS16095 0.54 -0.6
3,451,220 - AMB_RS16095 0.54 +0.3
3,451,220 - AMB_RS16095 0.54 +5.0
3,451,275 + AMB_RS16095 0.60 -1.2
3,451,275 + AMB_RS16095 0.60 -2.8
3,451,276 - AMB_RS16095 0.60 +0.4
3,451,276 - AMB_RS16095 0.60 +0.3
3,451,437 + AMB_RS16095 0.76 +0.2
3,451,437 + AMB_RS16095 0.76 +0.0
3,451,437 + AMB_RS16095 0.76 -0.3
3,451,437 + AMB_RS16095 0.76 +1.1
3,451,437 + AMB_RS16095 0.76 +0.6
3,451,437 + AMB_RS16095 0.76 -2.5
3,451,437 + AMB_RS16095 0.76 -0.2
3,451,437 + AMB_RS16095 0.76 -1.1
3,451,437 + AMB_RS16095 0.76 +0.7
3,451,437 + AMB_RS16095 0.76 -1.3
3,451,437 + AMB_RS16095 0.76 -0.6
3,451,437 + AMB_RS16095 0.76 -2.6
3,451,438 - AMB_RS16095 0.76 +1.3
3,451,438 - AMB_RS16095 0.76 +0.2
3,451,438 - AMB_RS16095 0.76 +0.6
3,451,438 - AMB_RS16095 0.76 +0.3
3,451,438 - AMB_RS16095 0.76 +2.7
3,451,438 - AMB_RS16095 0.76 -2.5
3,451,438 - AMB_RS16095 0.76 -2.7
3,451,438 - AMB_RS16095 0.76 -1.0
3,451,438 - AMB_RS16095 0.76 -3.3
3,451,438 - AMB_RS16095 0.76 -3.4
3,451,438 - AMB_RS16095 0.76 -0.8
3,451,438 - AMB_RS16095 0.76 -0.0
3,451,438 - AMB_RS16095 0.76 +1.0
3,451,438 - AMB_RS16095 0.76 +0.4
3,451,438 - AMB_RS16095 0.76 -0.8
3,451,477 + AMB_RS16095 0.80 +0.0
3,451,477 + AMB_RS16095 0.80 -1.1
3,451,477 + AMB_RS16095 0.80 -1.7
3,451,477 + AMB_RS16095 0.80 -2.7
3,451,477 + AMB_RS16095 0.80 -1.3
3,451,477 + AMB_RS16095 0.80 -4.4
3,451,477 + AMB_RS16095 0.80 -1.5
3,451,477 + AMB_RS16095 0.80 +0.7
3,451,478 - AMB_RS16095 0.80 -0.5
3,451,478 - AMB_RS16095 0.80 +3.3
3,451,478 - AMB_RS16095 0.80 -0.9
3,451,478 - AMB_RS16095 0.80 +0.1
3,451,478 - AMB_RS16095 0.80 +1.0
3,451,478 - AMB_RS16095 0.80 +0.4
3,451,478 - AMB_RS16095 0.80 -2.6
3,451,511 + AMB_RS16095 0.84 +0.7
3,451,512 - AMB_RS16095 0.84 +0.6
3,451,567 + AMB_RS16095 0.89 +1.3
3,451,567 + AMB_RS16095 0.89 -0.7
3,451,568 - AMB_RS16095 0.89 -3.4
3,451,568 - AMB_RS16095 0.89 +0.1
3,451,568 - AMB_RS16095 0.89 +0.1
3,451,568 - AMB_RS16095 0.89 +0.3
3,451,568 - AMB_RS16095 0.89 +0.3
3,451,568 - AMB_RS16095 0.89 +2.4
3,451,571 + AMB_RS16095 0.90 -0.6
3,451,571 + AMB_RS16095 0.90 +0.9
3,451,590 + -3.4
3,451,591 - +1.0
3,451,636 - -1.6
3,451,682 + -3.0
3,451,699 - -0.0
3,451,902 + AMB_RS16100 0.11 -1.1
3,451,902 + AMB_RS16100 0.11 -1.4
3,451,903 - AMB_RS16100 0.12 -1.8
3,451,903 - AMB_RS16100 0.12 -0.4
3,451,903 - AMB_RS16100 0.12 -2.0
3,452,001 + AMB_RS16100 0.23 +0.9
3,452,109 + AMB_RS16100 0.35 -0.0
3,452,109 + AMB_RS16100 0.35 -3.4
3,452,145 + AMB_RS16100 0.39 -3.2
3,452,145 + AMB_RS16100 0.39 +0.4
3,452,145 + AMB_RS16100 0.39 -0.0
3,452,146 - AMB_RS16100 0.39 -0.0
3,452,146 - AMB_RS16100 0.39 -4.1

Or see this region's nucleotide sequence