Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS15125

Experiment: 150_nonmag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS15120 and AMB_RS15125 overlap by 4 nucleotidesAMB_RS15125 and AMB_RS15130 are separated by 3 nucleotides AMB_RS15120: AMB_RS15120 - chemotaxis response regulator protein-glutamate methylesterase, at 3,244,400 to 3,245,467 _RS15120 AMB_RS15125: AMB_RS15125 - protein-glutamate O-methyltransferase CheR, at 3,245,464 to 3,246,921 _RS15125 AMB_RS15130: AMB_RS15130 - hybrid sensor histidine kinase/response regulator, at 3,246,925 to 3,249,027 _RS15130 Position (kb) 3245 3246 3247Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3244.731 kb on + strand, within AMB_RS15120at 3244.731 kb on + strand, within AMB_RS15120at 3244.731 kb on + strand, within AMB_RS15120at 3244.731 kb on + strand, within AMB_RS15120at 3244.732 kb on - strand, within AMB_RS15120at 3244.732 kb on - strand, within AMB_RS15120at 3244.732 kb on - strand, within AMB_RS15120at 3245.102 kb on + strand, within AMB_RS15120at 3245.103 kb on - strand, within AMB_RS15120at 3245.103 kb on - strand, within AMB_RS15120at 3245.103 kb on - strand, within AMB_RS15120at 3245.184 kb on - strand, within AMB_RS15120at 3245.677 kb on + strand, within AMB_RS15125at 3245.678 kb on - strand, within AMB_RS15125at 3245.678 kb on - strand, within AMB_RS15125at 3245.806 kb on + strand, within AMB_RS15125at 3245.807 kb on - strand, within AMB_RS15125at 3245.921 kb on - strand, within AMB_RS15125at 3245.921 kb on - strand, within AMB_RS15125at 3245.968 kb on + strand, within AMB_RS15125at 3245.969 kb on - strand, within AMB_RS15125at 3246.115 kb on + strand, within AMB_RS15125at 3246.115 kb on + strand, within AMB_RS15125at 3246.116 kb on - strand, within AMB_RS15125at 3246.260 kb on - strand, within AMB_RS15125at 3246.260 kb on - strand, within AMB_RS15125at 3246.536 kb on - strand, within AMB_RS15125at 3246.536 kb on - strand, within AMB_RS15125at 3246.536 kb on - strand, within AMB_RS15125at 3246.536 kb on - strand, within AMB_RS15125at 3246.697 kb on + strand, within AMB_RS15125at 3246.697 kb on + strand, within AMB_RS15125at 3246.727 kb on + strand, within AMB_RS15125at 3246.727 kb on + strand, within AMB_RS15125at 3246.727 kb on + strand, within AMB_RS15125at 3246.728 kb on - strand, within AMB_RS15125at 3246.728 kb on - strand, within AMB_RS15125at 3246.730 kb on + strand, within AMB_RS15125at 3246.730 kb on + strand, within AMB_RS15125at 3246.730 kb on + strand, within AMB_RS15125at 3246.730 kb on + strand, within AMB_RS15125at 3246.731 kb on - strand, within AMB_RS15125at 3246.731 kb on - strand, within AMB_RS15125at 3246.731 kb on - strand, within AMB_RS15125at 3246.731 kb on - strand, within AMB_RS15125at 3246.731 kb on - strand, within AMB_RS15125at 3246.731 kb on - strand, within AMB_RS15125at 3246.784 kb on + strandat 3246.784 kb on + strandat 3246.784 kb on + strandat 3246.785 kb on - strandat 3246.919 kb on + strandat 3246.919 kb on + strandat 3246.920 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
remove
3,244,731 + AMB_RS15120 0.31 +0.3
3,244,731 + AMB_RS15120 0.31 +1.3
3,244,731 + AMB_RS15120 0.31 +3.1
3,244,731 + AMB_RS15120 0.31 +0.7
3,244,732 - AMB_RS15120 0.31 -0.6
3,244,732 - AMB_RS15120 0.31 -0.3
3,244,732 - AMB_RS15120 0.31 -2.9
3,245,102 + AMB_RS15120 0.66 -0.2
3,245,103 - AMB_RS15120 0.66 +1.7
3,245,103 - AMB_RS15120 0.66 -1.6
3,245,103 - AMB_RS15120 0.66 +0.8
3,245,184 - AMB_RS15120 0.73 +0.2
3,245,677 + AMB_RS15125 0.15 +0.6
3,245,678 - AMB_RS15125 0.15 -2.7
3,245,678 - AMB_RS15125 0.15 +0.4
3,245,806 + AMB_RS15125 0.23 -2.6
3,245,807 - AMB_RS15125 0.24 -1.2
3,245,921 - AMB_RS15125 0.31 -2.7
3,245,921 - AMB_RS15125 0.31 +1.0
3,245,968 + AMB_RS15125 0.35 +1.9
3,245,969 - AMB_RS15125 0.35 -1.9
3,246,115 + AMB_RS15125 0.45 -4.0
3,246,115 + AMB_RS15125 0.45 -1.5
3,246,116 - AMB_RS15125 0.45 -0.8
3,246,260 - AMB_RS15125 0.55 -0.8
3,246,260 - AMB_RS15125 0.55 -2.2
3,246,536 - AMB_RS15125 0.74 +0.2
3,246,536 - AMB_RS15125 0.74 -3.5
3,246,536 - AMB_RS15125 0.74 +0.1
3,246,536 - AMB_RS15125 0.74 -0.9
3,246,697 + AMB_RS15125 0.85 -0.8
3,246,697 + AMB_RS15125 0.85 +0.5
3,246,727 + AMB_RS15125 0.87 -2.5
3,246,727 + AMB_RS15125 0.87 -1.9
3,246,727 + AMB_RS15125 0.87 -1.4
3,246,728 - AMB_RS15125 0.87 +2.9
3,246,728 - AMB_RS15125 0.87 -2.9
3,246,730 + AMB_RS15125 0.87 -2.6
3,246,730 + AMB_RS15125 0.87 +0.2
3,246,730 + AMB_RS15125 0.87 +0.6
3,246,730 + AMB_RS15125 0.87 -0.7
3,246,731 - AMB_RS15125 0.87 +0.3
3,246,731 - AMB_RS15125 0.87 -1.0
3,246,731 - AMB_RS15125 0.87 -1.6
3,246,731 - AMB_RS15125 0.87 -4.0
3,246,731 - AMB_RS15125 0.87 -0.6
3,246,731 - AMB_RS15125 0.87 +0.2
3,246,784 + +0.3
3,246,784 + +0.7
3,246,784 + -2.5
3,246,785 - +0.6
3,246,919 + +1.3
3,246,919 + -4.0
3,246,920 - -0.5

Or see this region's nucleotide sequence