Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS14775

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS14770 and AMB_RS14775 are separated by 427 nucleotidesAMB_RS14775 and AMB_RS14780 are separated by 27 nucleotides AMB_RS14770: AMB_RS14770 - C4-dicarboxylate transport sensor protein dctB, at 3,133,324 to 3,135,300 _RS14770 AMB_RS14775: AMB_RS14775 - hypothetical protein, at 3,135,728 to 3,136,927 _RS14775 AMB_RS14780: AMB_RS14780 - ATPase, at 3,136,955 to 3,142,894 _RS14780 Position (kb) 3135 3136 3137Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 3134.790 kb on - strand, within AMB_RS14770at 3134.790 kb on - strand, within AMB_RS14770at 3134.828 kb on + strand, within AMB_RS14770at 3134.828 kb on + strand, within AMB_RS14770at 3134.828 kb on + strand, within AMB_RS14770at 3135.134 kb on + strandat 3135.285 kb on + strandat 3135.285 kb on + strandat 3135.317 kb on + strandat 3135.318 kb on - strandat 3135.432 kb on + strandat 3135.432 kb on + strandat 3135.432 kb on + strandat 3135.439 kb on + strandat 3135.440 kb on - strandat 3135.499 kb on + strandat 3135.500 kb on - strandat 3135.503 kb on + strandat 3135.503 kb on + strandat 3135.504 kb on - strandat 3135.504 kb on - strandat 3135.507 kb on - strandat 3135.553 kb on - strandat 3135.567 kb on + strandat 3135.674 kb on + strandat 3135.695 kb on - strandat 3135.709 kb on + strandat 3135.986 kb on + strand, within AMB_RS14775at 3135.986 kb on + strand, within AMB_RS14775at 3135.986 kb on + strand, within AMB_RS14775at 3135.986 kb on + strand, within AMB_RS14775at 3135.986 kb on + strand, within AMB_RS14775at 3135.986 kb on + strand, within AMB_RS14775at 3135.987 kb on - strand, within AMB_RS14775at 3135.987 kb on - strand, within AMB_RS14775at 3135.987 kb on - strand, within AMB_RS14775at 3135.987 kb on - strand, within AMB_RS14775at 3135.987 kb on - strand, within AMB_RS14775at 3135.987 kb on - strand, within AMB_RS14775at 3135.987 kb on - strand, within AMB_RS14775at 3135.987 kb on - strand, within AMB_RS14775at 3136.035 kb on - strand, within AMB_RS14775at 3136.035 kb on - strand, within AMB_RS14775at 3136.037 kb on + strand, within AMB_RS14775at 3136.037 kb on + strand, within AMB_RS14775at 3136.037 kb on + strand, within AMB_RS14775at 3136.037 kb on + strand, within AMB_RS14775at 3136.037 kb on + strand, within AMB_RS14775at 3136.037 kb on + strand, within AMB_RS14775at 3136.038 kb on - strand, within AMB_RS14775at 3136.038 kb on - strand, within AMB_RS14775at 3136.038 kb on - strand, within AMB_RS14775at 3136.038 kb on - strand, within AMB_RS14775at 3136.151 kb on + strand, within AMB_RS14775at 3136.152 kb on - strand, within AMB_RS14775at 3136.152 kb on - strand, within AMB_RS14775at 3136.152 kb on - strand, within AMB_RS14775at 3136.152 kb on - strand, within AMB_RS14775at 3136.168 kb on + strand, within AMB_RS14775at 3136.168 kb on + strand, within AMB_RS14775at 3136.253 kb on + strand, within AMB_RS14775at 3136.253 kb on + strand, within AMB_RS14775at 3136.254 kb on - strand, within AMB_RS14775at 3136.291 kb on + strand, within AMB_RS14775at 3136.292 kb on - strand, within AMB_RS14775at 3136.329 kb on - strand, within AMB_RS14775at 3136.382 kb on + strand, within AMB_RS14775at 3136.383 kb on - strand, within AMB_RS14775at 3136.383 kb on - strand, within AMB_RS14775at 3136.383 kb on - strand, within AMB_RS14775at 3136.383 kb on - strand, within AMB_RS14775at 3136.423 kb on + strand, within AMB_RS14775at 3136.423 kb on + strand, within AMB_RS14775at 3136.423 kb on + strand, within AMB_RS14775at 3136.423 kb on + strand, within AMB_RS14775at 3136.423 kb on + strand, within AMB_RS14775at 3136.423 kb on + strand, within AMB_RS14775at 3136.423 kb on + strand, within AMB_RS14775at 3136.424 kb on - strand, within AMB_RS14775at 3136.424 kb on - strand, within AMB_RS14775at 3136.424 kb on - strand, within AMB_RS14775at 3136.424 kb on - strand, within AMB_RS14775at 3136.424 kb on - strand, within AMB_RS14775at 3136.424 kb on - strand, within AMB_RS14775at 3136.424 kb on - strand, within AMB_RS14775at 3136.424 kb on - strand, within AMB_RS14775at 3136.479 kb on - strand, within AMB_RS14775at 3136.479 kb on - strand, within AMB_RS14775at 3136.479 kb on - strand, within AMB_RS14775at 3136.479 kb on - strand, within AMB_RS14775at 3136.490 kb on + strand, within AMB_RS14775at 3136.490 kb on + strand, within AMB_RS14775at 3136.490 kb on + strand, within AMB_RS14775at 3136.490 kb on + strand, within AMB_RS14775at 3136.490 kb on + strand, within AMB_RS14775at 3136.491 kb on - strand, within AMB_RS14775at 3136.491 kb on - strand, within AMB_RS14775at 3136.491 kb on - strand, within AMB_RS14775at 3136.491 kb on - strand, within AMB_RS14775at 3136.491 kb on - strand, within AMB_RS14775at 3136.626 kb on + strand, within AMB_RS14775at 3136.691 kb on + strand, within AMB_RS14775at 3136.691 kb on + strand, within AMB_RS14775at 3136.692 kb on - strand, within AMB_RS14775at 3136.692 kb on - strand, within AMB_RS14775at 3136.692 kb on - strand, within AMB_RS14775at 3136.715 kb on + strand, within AMB_RS14775at 3136.716 kb on - strand, within AMB_RS14775at 3136.716 kb on - strand, within AMB_RS14775at 3136.759 kb on + strand, within AMB_RS14775at 3136.922 kb on + strandat 3136.922 kb on + strandat 3136.974 kb on - strandat 3136.994 kb on + strandat 3136.994 kb on + strandat 3136.994 kb on + strandat 3136.994 kb on + strandat 3136.994 kb on + strandat 3136.994 kb on + strandat 3136.994 kb on + strandat 3136.994 kb on + strandat 3136.994 kb on + strandat 3136.995 kb on - strandat 3136.995 kb on - strandat 3136.995 kb on - strandat 3136.995 kb on - strandat 3136.995 kb on - strandat 3136.995 kb on - strandat 3136.995 kb on - strandat 3136.997 kb on - strandat 3137.106 kb on - strandat 3137.418 kb on + strandat 3137.418 kb on + strandat 3137.419 kb on - strandat 3137.419 kb on - strandat 3137.419 kb on - strandat 3137.419 kb on - strandat 3137.474 kb on + strandat 3137.475 kb on - strandat 3137.475 kb on - strandat 3137.535 kb on - strandat 3137.535 kb on - strandat 3137.535 kb on - strandat 3137.535 kb on - strandat 3137.555 kb on + strand, within AMB_RS14780at 3137.555 kb on + strand, within AMB_RS14780at 3137.555 kb on + strand, within AMB_RS14780at 3137.556 kb on - strand, within AMB_RS14780at 3137.556 kb on - strand, within AMB_RS14780at 3137.556 kb on - strand, within AMB_RS14780at 3137.723 kb on + strand, within AMB_RS14780at 3137.855 kb on + strand, within AMB_RS14780

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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3,134,790 - AMB_RS14770 0.74 -0.9
3,134,790 - AMB_RS14770 0.74 -2.2
3,134,828 + AMB_RS14770 0.76 -3.4
3,134,828 + AMB_RS14770 0.76 +0.7
3,134,828 + AMB_RS14770 0.76 -3.2
3,135,134 + -1.4
3,135,285 + +1.3
3,135,285 + +0.5
3,135,317 + -0.3
3,135,318 - -4.0
3,135,432 + -2.2
3,135,432 + +1.2
3,135,432 + +1.2
3,135,439 + -2.2
3,135,440 - -1.4
3,135,499 + +1.1
3,135,500 - -4.2
3,135,503 + -0.4
3,135,503 + -1.0
3,135,504 - -0.6
3,135,504 - -3.7
3,135,507 - -4.0
3,135,553 - -0.1
3,135,567 + -0.7
3,135,674 + +0.2
3,135,695 - -1.4
3,135,709 + -2.7
3,135,986 + AMB_RS14775 0.21 -2.5
3,135,986 + AMB_RS14775 0.21 +0.6
3,135,986 + AMB_RS14775 0.21 -2.2
3,135,986 + AMB_RS14775 0.21 +1.2
3,135,986 + AMB_RS14775 0.21 +0.4
3,135,986 + AMB_RS14775 0.21 +1.2
3,135,987 - AMB_RS14775 0.22 -0.3
3,135,987 - AMB_RS14775 0.22 -0.1
3,135,987 - AMB_RS14775 0.22 +0.0
3,135,987 - AMB_RS14775 0.22 -3.0
3,135,987 - AMB_RS14775 0.22 -1.0
3,135,987 - AMB_RS14775 0.22 -0.4
3,135,987 - AMB_RS14775 0.22 -0.6
3,135,987 - AMB_RS14775 0.22 -2.6
3,136,035 - AMB_RS14775 0.26 -2.2
3,136,035 - AMB_RS14775 0.26 +0.0
3,136,037 + AMB_RS14775 0.26 -0.4
3,136,037 + AMB_RS14775 0.26 -3.5
3,136,037 + AMB_RS14775 0.26 -3.0
3,136,037 + AMB_RS14775 0.26 -0.8
3,136,037 + AMB_RS14775 0.26 -3.3
3,136,037 + AMB_RS14775 0.26 -3.4
3,136,038 - AMB_RS14775 0.26 +0.0
3,136,038 - AMB_RS14775 0.26 -2.9
3,136,038 - AMB_RS14775 0.26 +2.1
3,136,038 - AMB_RS14775 0.26 +0.3
3,136,151 + AMB_RS14775 0.35 +0.8
3,136,152 - AMB_RS14775 0.35 -0.3
3,136,152 - AMB_RS14775 0.35 -4.7
3,136,152 - AMB_RS14775 0.35 +0.0
3,136,152 - AMB_RS14775 0.35 -2.7
3,136,168 + AMB_RS14775 0.37 -1.9
3,136,168 + AMB_RS14775 0.37 -2.6
3,136,253 + AMB_RS14775 0.44 +0.8
3,136,253 + AMB_RS14775 0.44 +0.6
3,136,254 - AMB_RS14775 0.44 -3.4
3,136,291 + AMB_RS14775 0.47 -0.3
3,136,292 - AMB_RS14775 0.47 -3.0
3,136,329 - AMB_RS14775 0.50 +0.8
3,136,382 + AMB_RS14775 0.55 +0.3
3,136,383 - AMB_RS14775 0.55 -4.2
3,136,383 - AMB_RS14775 0.55 -0.1
3,136,383 - AMB_RS14775 0.55 -2.7
3,136,383 - AMB_RS14775 0.55 +1.0
3,136,423 + AMB_RS14775 0.58 -1.1
3,136,423 + AMB_RS14775 0.58 -3.3
3,136,423 + AMB_RS14775 0.58 -0.3
3,136,423 + AMB_RS14775 0.58 -0.1
3,136,423 + AMB_RS14775 0.58 -2.5
3,136,423 + AMB_RS14775 0.58 -3.6
3,136,423 + AMB_RS14775 0.58 -0.6
3,136,424 - AMB_RS14775 0.58 -2.6
3,136,424 - AMB_RS14775 0.58 +3.1
3,136,424 - AMB_RS14775 0.58 -0.0
3,136,424 - AMB_RS14775 0.58 -2.2
3,136,424 - AMB_RS14775 0.58 -3.1
3,136,424 - AMB_RS14775 0.58 -2.9
3,136,424 - AMB_RS14775 0.58 -1.1
3,136,424 - AMB_RS14775 0.58 -0.0
3,136,479 - AMB_RS14775 0.63 +0.4
3,136,479 - AMB_RS14775 0.63 -3.7
3,136,479 - AMB_RS14775 0.63 -0.4
3,136,479 - AMB_RS14775 0.63 -0.3
3,136,490 + AMB_RS14775 0.64 +0.4
3,136,490 + AMB_RS14775 0.64 -0.7
3,136,490 + AMB_RS14775 0.64 +0.0
3,136,490 + AMB_RS14775 0.64 +0.3
3,136,490 + AMB_RS14775 0.64 +1.4
3,136,491 - AMB_RS14775 0.64 +1.8
3,136,491 - AMB_RS14775 0.64 -2.2
3,136,491 - AMB_RS14775 0.64 -2.2
3,136,491 - AMB_RS14775 0.64 -0.4
3,136,491 - AMB_RS14775 0.64 -2.0
3,136,626 + AMB_RS14775 0.75 +0.7
3,136,691 + AMB_RS14775 0.80 -3.7
3,136,691 + AMB_RS14775 0.80 -0.7
3,136,692 - AMB_RS14775 0.80 -0.0
3,136,692 - AMB_RS14775 0.80 +0.4
3,136,692 - AMB_RS14775 0.80 -0.5
3,136,715 + AMB_RS14775 0.82 -2.0
3,136,716 - AMB_RS14775 0.82 -0.6
3,136,716 - AMB_RS14775 0.82 +0.7
3,136,759 + AMB_RS14775 0.86 -5.4
3,136,922 + +1.0
3,136,922 + -2.2
3,136,974 - -1.9
3,136,994 + -1.7
3,136,994 + -1.2
3,136,994 + +0.6
3,136,994 + +1.3
3,136,994 + +0.4
3,136,994 + -2.4
3,136,994 + +0.7
3,136,994 + -1.4
3,136,994 + -1.4
3,136,995 - -2.9
3,136,995 - -3.0
3,136,995 - -0.6
3,136,995 - -0.1
3,136,995 - -2.5
3,136,995 - +0.2
3,136,995 - -1.0
3,136,997 - -2.9
3,137,106 - +2.3
3,137,418 + +1.9
3,137,418 + +2.9
3,137,419 - -1.1
3,137,419 - +1.0
3,137,419 - +0.7
3,137,419 - -0.4
3,137,474 + -3.3
3,137,475 - -3.0
3,137,475 - -2.0
3,137,535 - -5.1
3,137,535 - +1.3
3,137,535 - -2.6
3,137,535 - -0.3
3,137,555 + AMB_RS14780 0.10 -2.0
3,137,555 + AMB_RS14780 0.10 +0.2
3,137,555 + AMB_RS14780 0.10 +0.0
3,137,556 - AMB_RS14780 0.10 -1.6
3,137,556 - AMB_RS14780 0.10 +0.3
3,137,556 - AMB_RS14780 0.10 +2.6
3,137,723 + AMB_RS14780 0.13 -0.1
3,137,855 + AMB_RS14780 0.15 -2.5

Or see this region's nucleotide sequence