Experiment: 150_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS14105 and AMB_RS14110 are separated by 197 nucleotides AMB_RS14110 and AMB_RS14115 are separated by 105 nucleotides AMB_RS14115 and AMB_RS14120 are separated by 636 nucleotides
AMB_RS14105: AMB_RS14105 - citrate (Si)-synthase, at 2,996,859 to 2,998,175
_RS14105
AMB_RS14110: AMB_RS14110 - cyclic nucleotide-binding domain-containing protein, at 2,998,373 to 2,998,714
_RS14110
AMB_RS14115: AMB_RS14115 - RNA polymerase sigma factor RpoH, at 2,998,820 to 2,999,698
_RS14115
AMB_RS14120: AMB_RS14120 - EamA family transporter, at 3,000,335 to 3,001,222
_RS14120
Position (kb) 2998
2999
3000 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 2998.173 kb on + strand at 2998.352 kb on + strand at 2998.520 kb on - strand, within AMB_RS14110 at 3000.078 kb on + strand at 3000.078 kb on + strand at 3000.079 kb on - strand at 3000.079 kb on - strand at 3000.173 kb on + strand at 3000.174 kb on - strand at 3000.576 kb on + strand, within AMB_RS14120 at 3000.576 kb on + strand, within AMB_RS14120 at 3000.577 kb on - strand, within AMB_RS14120
Per-strain Table
Position Strand Gene LocusTag Fraction 150_nonmag_2 remove 2,998,173 + -1.4 2,998,352 + -3.0 2,998,520 - AMB_RS14110 0.43 -0.6 3,000,078 + -2.8 3,000,078 + -2.1 3,000,079 - -0.1 3,000,079 - +1.8 3,000,173 + +1.2 3,000,174 - -3.8 3,000,576 + AMB_RS14120 0.27 +1.0 3,000,576 + AMB_RS14120 0.27 +0.6 3,000,577 - AMB_RS14120 0.27 -0.4
Or see this region's nucleotide sequence