Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS13700

Experiment: 150_nonmag_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	150_nonmag_2
2,909,064	+		AMB_RS13690	0.83	+0.9
2,909,115	+		AMB_RS13690	0.88	-0.4
2,909,125	+		AMB_RS13690	0.89	-0.6
2,909,163	+				-0.2
2,909,163	+				-1.5
2,909,163	+				-2.7
2,909,164	-				-0.6
2,909,164	-				+0.5
2,909,164	-				+0.5
2,909,164	-				+0.4
2,909,164	-				-1.3
2,909,164	-				-2.6
2,909,164	-				-4.2
2,909,164	-				-2.6
2,909,447	-				-0.7
2,909,740	+		AMB_RS13695	0.38	-0.9
2,909,740	+		AMB_RS13695	0.38	-0.5
2,909,953	+		AMB_RS13695	0.81	-0.0
2,909,954	-		AMB_RS13695	0.81	-2.5
2,909,954	-		AMB_RS13695	0.81	+0.0
2,909,954	-		AMB_RS13695	0.81	+1.4
2,910,074	+				-0.6
2,910,173	+				+0.4
2,910,174	-				+0.6
2,910,174	-				+2.5
2,910,395	-		AMB_RS13700	0.15	-0.8
2,910,395	-		AMB_RS13700	0.15	-2.5
2,910,415	+		AMB_RS13700	0.16	-1.0
2,910,415	+		AMB_RS13700	0.16	+0.5
2,910,416	-		AMB_RS13700	0.16	-2.5
2,910,416	-		AMB_RS13700	0.16	+0.6
2,910,416	-		AMB_RS13700	0.16	-1.8
2,910,443	+		AMB_RS13700	0.17	+0.7
2,910,443	+		AMB_RS13700	0.17	-2.6
2,910,443	+		AMB_RS13700	0.17	-1.7
2,910,444	-		AMB_RS13700	0.17	-0.0
2,910,444	-		AMB_RS13700	0.17	-0.4
2,910,444	-		AMB_RS13700	0.17	-0.0
2,910,467	+		AMB_RS13700	0.18	-1.4
2,910,468	-		AMB_RS13700	0.18	-2.7
2,910,468	-		AMB_RS13700	0.18	-4.0
2,910,498	-		AMB_RS13700	0.20	+0.4
2,910,518	+		AMB_RS13700	0.20	-0.7
2,910,518	+		AMB_RS13700	0.20	-4.1
2,910,548	+		AMB_RS13700	0.22	-3.4
2,910,548	+		AMB_RS13700	0.22	-3.8
2,910,549	-		AMB_RS13700	0.22	+0.5
2,910,584	+		AMB_RS13700	0.23	+0.0
2,910,584	+		AMB_RS13700	0.23	+1.0
2,910,584	+		AMB_RS13700	0.23	+0.4
2,910,585	-		AMB_RS13700	0.23	-2.0
2,910,585	-		AMB_RS13700	0.23	-1.6
2,910,585	-		AMB_RS13700	0.23	+1.3
2,910,586	+		AMB_RS13700	0.23	+1.0
2,910,587	-		AMB_RS13700	0.23	-4.1
2,910,636	-		AMB_RS13700	0.25	-0.2
2,910,636	-		AMB_RS13700	0.25	-2.4
2,910,636	-		AMB_RS13700	0.25	-1.0
2,910,636	-		AMB_RS13700	0.25	+1.8
2,910,647	+		AMB_RS13700	0.26	+1.6
2,910,647	+		AMB_RS13700	0.26	-2.5
2,910,647	+		AMB_RS13700	0.26	-1.2
2,910,649	+		AMB_RS13700	0.26	-0.0
2,910,649	+		AMB_RS13700	0.26	-0.1
2,910,649	+		AMB_RS13700	0.26	-1.4
2,910,650	-		AMB_RS13700	0.26	+1.1
2,910,650	-		AMB_RS13700	0.26	+1.0
2,910,650	-		AMB_RS13700	0.26	-2.6
2,910,650	-		AMB_RS13700	0.26	-1.6
2,910,650	-		AMB_RS13700	0.26	-1.0
2,910,650	-		AMB_RS13700	0.26	+0.6
2,910,749	+		AMB_RS13700	0.30	-0.6
2,910,866	+		AMB_RS13700	0.35	-3.3
2,911,009	-		AMB_RS13700	0.41	-3.0
2,911,009	-		AMB_RS13700	0.41	-1.6
2,911,036	-		AMB_RS13700	0.43	+0.4
2,911,106	+		AMB_RS13700	0.46	+1.8
2,911,106	+		AMB_RS13700	0.46	+1.0
2,911,107	-		AMB_RS13700	0.46	-0.1
2,911,337	+		AMB_RS13700	0.55	-2.2
2,911,339	+		AMB_RS13700	0.56	-2.5
2,911,517	+		AMB_RS13700	0.63	-2.5
2,911,517	+		AMB_RS13700	0.63	+1.9
2,911,518	-		AMB_RS13700	0.63	-2.0
2,911,518	-		AMB_RS13700	0.63	-1.1
2,911,523	+		AMB_RS13700	0.63	-3.6
2,911,523	+		AMB_RS13700	0.63	-1.0
2,911,523	+		AMB_RS13700	0.63	-2.7
2,911,524	-		AMB_RS13700	0.63	+2.8
2,911,524	-		AMB_RS13700	0.63	+5.0
2,911,524	-		AMB_RS13700	0.63	+1.1
2,911,524	-		AMB_RS13700	0.63	-0.4
2,911,524	-		AMB_RS13700	0.63	-1.4
2,911,573	+		AMB_RS13700	0.66	+1.0
2,911,634	-		AMB_RS13700	0.68	-3.9
2,911,634	-		AMB_RS13700	0.68	+1.5
2,911,637	+		AMB_RS13700	0.68	-0.6
2,911,638	-		AMB_RS13700	0.68	+1.3
2,911,638	-		AMB_RS13700	0.68	+2.2
2,911,729	-		AMB_RS13700	0.72	+0.7
2,911,790	+		AMB_RS13700	0.75	-2.2
2,911,791	-		AMB_RS13700	0.75	-4.1
2,911,823	-		AMB_RS13700	0.76	-0.5
2,911,849	+		AMB_RS13700	0.77	+0.4
2,911,858	+		AMB_RS13700	0.78	-2.6
2,911,871	+		AMB_RS13700	0.78	-2.2
2,911,871	+		AMB_RS13700	0.78	-0.1
2,911,872	-		AMB_RS13700	0.78	+0.7
2,911,897	+		AMB_RS13700	0.79	+0.0
2,911,897	+		AMB_RS13700	0.79	+0.7
2,911,897	+		AMB_RS13700	0.79	-0.6
2,911,898	-		AMB_RS13700	0.79	-0.3
2,911,898	-		AMB_RS13700	0.79	-0.1
2,911,898	-		AMB_RS13700	0.79	+0.4
2,911,961	-		AMB_RS13700	0.82	-0.3
2,912,058	-		AMB_RS13700	0.86	-0.1
2,912,160	-				-0.6
2,912,248	+				-2.9
2,912,292	+				+2.8
2,912,293	-				-2.2
2,912,293	-				+0.3
2,912,309	+				-2.6
2,912,309	+				+0.7
2,912,309	+				-2.6
2,912,309	+				+2.2
2,912,309	+				+0.7
2,912,309	+				-1.0
2,912,309	+				+1.7
2,912,309	+				-1.3
2,912,309	+				+0.8
2,912,309	+				+1.6
2,912,310	-				-0.8
2,912,310	-				-1.1
2,912,310	-				-0.1
2,912,310	-				+0.7
2,912,312	-				-1.7
2,912,388	+				+1.2
2,912,388	+				-2.7
2,912,388	+				-2.9
2,912,388	+				-0.5
2,912,388	+				-3.1
2,912,389	-				+0.3
2,912,389	-				+1.3
2,912,389	-				-0.7
2,912,508	-		AMB_RS13705	0.25	-0.7
2,912,573	-		AMB_RS13705	0.39	-1.1
2,912,596	+		AMB_RS13705	0.43	-0.0
2,912,596	+		AMB_RS13705	0.43	-3.3
2,912,596	+		AMB_RS13705	0.43	-3.1
2,912,596	+		AMB_RS13705	0.43	-0.6
2,912,596	+		AMB_RS13705	0.43	-0.0
2,912,596	+		AMB_RS13705	0.43	-0.2
2,912,597	-		AMB_RS13705	0.44	-0.1
2,912,597	-		AMB_RS13705	0.44	-2.2
2,912,597	-		AMB_RS13705	0.44	-0.9
2,912,632	-		AMB_RS13705	0.51	-0.7
2,912,685	+		AMB_RS13705	0.62	-0.6
2,912,685	+		AMB_RS13705	0.62	-1.7
2,912,686	-		AMB_RS13705	0.62	+0.4
2,912,815	+		AMB_RS13705	0.89	-0.0
2,912,815	+		AMB_RS13705	0.89	+0.9
2,912,816	-		AMB_RS13705	0.90	-1.0
2,912,816	-		AMB_RS13705	0.90	+0.3
2,912,816	-		AMB_RS13705	0.90	-4.4
2,912,816	-		AMB_RS13705	0.90	-1.1
2,912,818	+				-3.2
2,912,818	-				+0.8
2,912,925	+				+0.2
2,912,926	-				-0.6
2,912,941	-				-1.1
2,912,985	+				-1.4
2,912,986	-				-2.6
2,912,990	+				-1.2
2,913,047	+		AMB_RS13710	0.19	+0.1
2,913,047	+		AMB_RS13710	0.19	+3.2
2,913,278	-		AMB_RS13710	0.68	-2.8
2,913,338	-		AMB_RS13710	0.81	-0.6