Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS12540

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS12530 and AMB_RS12535 are separated by 8 nucleotidesAMB_RS12535 and AMB_RS12540 are separated by 17 nucleotidesAMB_RS12540 and AMB_RS12545 are separated by 22 nucleotidesAMB_RS12545 and AMB_RS12550 are separated by 151 nucleotides AMB_RS12530: AMB_RS12530 - phosphatidate cytidylyltransferase, at 2,671,253 to 2,672,041 _RS12530 AMB_RS12535: AMB_RS12535 - isoprenyl transferase, at 2,672,050 to 2,672,781 _RS12535 AMB_RS12540: AMB_RS12540 - ribosome-recycling factor, at 2,672,799 to 2,673,371 _RS12540 AMB_RS12545: AMB_RS12545 - UMP kinase, at 2,673,394 to 2,674,116 _RS12545 AMB_RS12550: AMB_RS12550 - elongation factor Ts, at 2,674,268 to 2,675,206 _RS12550 Position (kb) 2672 2673 2674Strain fitness (log2 ratio) -3 -2 -1 0 1at 2673.393 kb on - strandat 2673.393 kb on - strandat 2674.175 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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2,673,393 - +1.6
2,673,393 - -1.1
2,674,175 - -3.3

Or see this region's nucleotide sequence