Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS10635

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS10625 and AMB_RS10630 are separated by 142 nucleotidesAMB_RS10630 and AMB_RS10635 are separated by 81 nucleotidesAMB_RS10635 and AMB_RS10640 are separated by 69 nucleotides AMB_RS10625: AMB_RS10625 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 2,280,244 to 2,280,981 _RS10625 AMB_RS10630: AMB_RS10630 - acyl carrier protein, at 2,281,124 to 2,281,357 _RS10630 AMB_RS10635: AMB_RS10635 - beta-ketoacyl-[acyl-carrier-protein] synthase II, at 2,281,439 to 2,282,692 _RS10635 AMB_RS10640: AMB_RS10640 - endolytic transglycosylase MltG, at 2,282,762 to 2,283,736 _RS10640 Position (kb) 2281 2282 2283Strain fitness (log2 ratio) -2 -1 0 1at 2283.015 kb on - strand, within AMB_RS10640at 2283.407 kb on + strand, within AMB_RS10640at 2283.408 kb on - strand, within AMB_RS10640at 2283.459 kb on - strand, within AMB_RS10640at 2283.539 kb on + strand, within AMB_RS10640at 2283.540 kb on - strand, within AMB_RS10640

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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2,283,015 - AMB_RS10640 0.26 -0.6
2,283,407 + AMB_RS10640 0.66 -2.1
2,283,408 - AMB_RS10640 0.66 -1.4
2,283,459 - AMB_RS10640 0.71 -1.3
2,283,539 + AMB_RS10640 0.80 +0.4
2,283,540 - AMB_RS10640 0.80 +0.4

Or see this region's nucleotide sequence