Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS09260

Experiment: 150_nonmag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS09245 and AMB_RS09250 overlap by 4 nucleotidesAMB_RS09250 and AMB_RS09255 are separated by 13 nucleotidesAMB_RS09255 and AMB_RS09260 overlap by 1 nucleotidesAMB_RS09260 and AMB_RS09265 are separated by 4 nucleotidesAMB_RS09265 and AMB_RS09270 are separated by 11 nucleotidesAMB_RS09270 and AMB_RS09275 are separated by 10 nucleotides AMB_RS09245: AMB_RS09245 - transcriptional regulator, at 1,967,627 to 1,968,043 _RS09245 AMB_RS09250: AMB_RS09250 - arsenate reductase ArsC, at 1,968,040 to 1,968,540 _RS09250 AMB_RS09255: AMB_RS09255 - arsenate reductase ArsC, at 1,968,554 to 1,969,012 _RS09255 AMB_RS09260: AMB_RS09260 - arsenical-resistance protein, at 1,969,012 to 1,970,070 _RS09260 AMB_RS09265: AMB_RS09265 - arsenate reductase (glutaredoxin), at 1,970,075 to 1,970,503 _RS09265 AMB_RS09270: AMB_RS09270 - arsenical resistance operon transcriptional repressor ArsD, at 1,970,515 to 1,970,886 _RS09270 AMB_RS09275: AMB_RS09275 - arsenical pump-driving ATPase, at 1,970,897 to 1,972,603 _RS09275 Position (kb) 1969 1970 1971Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1968.055 kb on + strandat 1968.055 kb on + strandat 1968.055 kb on + strandat 1968.056 kb on - strandat 1968.056 kb on - strandat 1968.056 kb on - strandat 1968.649 kb on + strand, within AMB_RS09255at 1968.649 kb on + strand, within AMB_RS09255at 1968.662 kb on + strand, within AMB_RS09255at 1968.662 kb on + strand, within AMB_RS09255at 1968.662 kb on + strand, within AMB_RS09255at 1968.662 kb on + strand, within AMB_RS09255at 1968.662 kb on + strand, within AMB_RS09255at 1968.662 kb on + strand, within AMB_RS09255at 1968.663 kb on - strand, within AMB_RS09255at 1968.663 kb on - strand, within AMB_RS09255at 1968.664 kb on + strand, within AMB_RS09255at 1968.665 kb on - strand, within AMB_RS09255at 1968.944 kb on + strand, within AMB_RS09255at 1968.944 kb on + strand, within AMB_RS09255at 1968.945 kb on - strand, within AMB_RS09255at 1969.360 kb on + strand, within AMB_RS09260at 1969.360 kb on + strand, within AMB_RS09260at 1969.360 kb on + strand, within AMB_RS09260at 1969.361 kb on - strand, within AMB_RS09260at 1969.603 kb on + strand, within AMB_RS09260at 1969.603 kb on + strand, within AMB_RS09260at 1969.603 kb on + strand, within AMB_RS09260at 1969.603 kb on + strand, within AMB_RS09260at 1969.604 kb on - strand, within AMB_RS09260at 1969.604 kb on - strand, within AMB_RS09260at 1969.604 kb on - strand, within AMB_RS09260at 1969.825 kb on - strand, within AMB_RS09260at 1969.825 kb on - strand, within AMB_RS09260at 1969.825 kb on - strand, within AMB_RS09260at 1969.840 kb on + strand, within AMB_RS09260at 1970.053 kb on + strandat 1970.096 kb on + strandat 1970.096 kb on + strandat 1970.096 kb on + strandat 1970.096 kb on + strandat 1970.097 kb on - strandat 1970.097 kb on - strandat 1970.097 kb on - strandat 1970.177 kb on + strand, within AMB_RS09265at 1970.177 kb on + strand, within AMB_RS09265at 1970.177 kb on + strand, within AMB_RS09265at 1970.178 kb on - strand, within AMB_RS09265at 1970.274 kb on - strand, within AMB_RS09265at 1970.502 kb on - strandat 1970.533 kb on + strandat 1970.533 kb on + strandat 1970.533 kb on + strandat 1970.534 kb on - strandat 1970.650 kb on + strand, within AMB_RS09270at 1970.650 kb on + strand, within AMB_RS09270at 1970.754 kb on + strand, within AMB_RS09270at 1970.754 kb on + strand, within AMB_RS09270at 1970.754 kb on + strand, within AMB_RS09270at 1970.755 kb on - strand, within AMB_RS09270at 1970.774 kb on - strand, within AMB_RS09270at 1970.774 kb on - strand, within AMB_RS09270at 1970.774 kb on - strand, within AMB_RS09270at 1970.774 kb on - strand, within AMB_RS09270at 1970.774 kb on - strand, within AMB_RS09270at 1970.774 kb on - strand, within AMB_RS09270

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
remove
1,968,055 + -0.2
1,968,055 + +1.4
1,968,055 + -2.8
1,968,056 - -2.0
1,968,056 - -0.2
1,968,056 - +0.7
1,968,649 + AMB_RS09255 0.21 -2.3
1,968,649 + AMB_RS09255 0.21 -1.3
1,968,662 + AMB_RS09255 0.24 -2.5
1,968,662 + AMB_RS09255 0.24 -1.8
1,968,662 + AMB_RS09255 0.24 +0.1
1,968,662 + AMB_RS09255 0.24 +0.3
1,968,662 + AMB_RS09255 0.24 -3.3
1,968,662 + AMB_RS09255 0.24 -2.2
1,968,663 - AMB_RS09255 0.24 -2.8
1,968,663 - AMB_RS09255 0.24 +1.5
1,968,664 + AMB_RS09255 0.24 -2.5
1,968,665 - AMB_RS09255 0.24 -2.6
1,968,944 + AMB_RS09255 0.85 +2.1
1,968,944 + AMB_RS09255 0.85 -0.3
1,968,945 - AMB_RS09255 0.85 +0.7
1,969,360 + AMB_RS09260 0.33 -2.6
1,969,360 + AMB_RS09260 0.33 -1.2
1,969,360 + AMB_RS09260 0.33 -0.3
1,969,361 - AMB_RS09260 0.33 -2.6
1,969,603 + AMB_RS09260 0.56 -0.6
1,969,603 + AMB_RS09260 0.56 -1.9
1,969,603 + AMB_RS09260 0.56 -0.4
1,969,603 + AMB_RS09260 0.56 +1.0
1,969,604 - AMB_RS09260 0.56 -1.7
1,969,604 - AMB_RS09260 0.56 +1.9
1,969,604 - AMB_RS09260 0.56 -3.4
1,969,825 - AMB_RS09260 0.77 -0.1
1,969,825 - AMB_RS09260 0.77 +0.8
1,969,825 - AMB_RS09260 0.77 -2.9
1,969,840 + AMB_RS09260 0.78 +0.7
1,970,053 + -3.1
1,970,096 + +0.6
1,970,096 + -0.8
1,970,096 + +0.4
1,970,096 + -3.7
1,970,097 - +0.2
1,970,097 - +1.0
1,970,097 - -2.6
1,970,177 + AMB_RS09265 0.24 -0.6
1,970,177 + AMB_RS09265 0.24 -1.4
1,970,177 + AMB_RS09265 0.24 +2.2
1,970,178 - AMB_RS09265 0.24 +0.3
1,970,274 - AMB_RS09265 0.46 +0.6
1,970,502 - +0.7
1,970,533 + -0.8
1,970,533 + +1.0
1,970,533 + -0.6
1,970,534 - -0.3
1,970,650 + AMB_RS09270 0.36 -3.8
1,970,650 + AMB_RS09270 0.36 -1.6
1,970,754 + AMB_RS09270 0.64 -0.1
1,970,754 + AMB_RS09270 0.64 -2.6
1,970,754 + AMB_RS09270 0.64 -0.8
1,970,755 - AMB_RS09270 0.65 -2.5
1,970,774 - AMB_RS09270 0.70 +0.5
1,970,774 - AMB_RS09270 0.70 +0.5
1,970,774 - AMB_RS09270 0.70 -2.0
1,970,774 - AMB_RS09270 0.70 +0.1
1,970,774 - AMB_RS09270 0.70 -2.5
1,970,774 - AMB_RS09270 0.70 -2.2

Or see this region's nucleotide sequence