Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS09125

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS09115 and AMB_RS09120 overlap by 4 nucleotidesAMB_RS09120 and AMB_RS09125 overlap by 1 nucleotidesAMB_RS09125 and AMB_RS09130 are separated by 178 nucleotides AMB_RS09115: AMB_RS09115 - hypothetical protein, at 1,941,077 to 1,941,403 _RS09115 AMB_RS09120: AMB_RS09120 - ABC transporter ATP-binding protein, at 1,941,400 to 1,942,113 _RS09120 AMB_RS09125: AMB_RS09125 - ABC transporter ATP-binding protein, at 1,942,113 to 1,942,886 _RS09125 AMB_RS09130: AMB_RS09130 - high-affinity branched-chain amino acid ABC transporter permease LivM, at 1,943,065 to 1,944,312 _RS09130 Position (kb) 1942 1943Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1941.114 kb on + strand, within AMB_RS09115at 1941.114 kb on + strand, within AMB_RS09115at 1941.114 kb on + strand, within AMB_RS09115at 1941.114 kb on + strand, within AMB_RS09115at 1941.114 kb on + strand, within AMB_RS09115at 1941.114 kb on + strand, within AMB_RS09115at 1941.115 kb on - strand, within AMB_RS09115at 1941.115 kb on - strand, within AMB_RS09115at 1941.285 kb on + strand, within AMB_RS09115at 1941.285 kb on + strand, within AMB_RS09115at 1941.285 kb on + strand, within AMB_RS09115at 1941.286 kb on - strand, within AMB_RS09115at 1941.286 kb on - strand, within AMB_RS09115at 1941.423 kb on - strandat 1941.423 kb on - strandat 1941.500 kb on + strand, within AMB_RS09120at 1941.500 kb on + strand, within AMB_RS09120at 1941.500 kb on + strand, within AMB_RS09120at 1941.500 kb on + strand, within AMB_RS09120at 1941.501 kb on - strand, within AMB_RS09120at 1942.147 kb on + strandat 1942.148 kb on - strandat 1942.230 kb on - strand, within AMB_RS09125at 1942.230 kb on - strand, within AMB_RS09125at 1942.259 kb on + strand, within AMB_RS09125at 1942.259 kb on + strand, within AMB_RS09125at 1942.259 kb on + strand, within AMB_RS09125at 1942.260 kb on - strand, within AMB_RS09125at 1942.432 kb on + strand, within AMB_RS09125at 1942.589 kb on + strand, within AMB_RS09125at 1942.589 kb on + strand, within AMB_RS09125at 1942.589 kb on + strand, within AMB_RS09125at 1942.589 kb on + strand, within AMB_RS09125at 1942.589 kb on + strand, within AMB_RS09125at 1942.590 kb on - strand, within AMB_RS09125at 1942.590 kb on - strand, within AMB_RS09125at 1942.590 kb on - strand, within AMB_RS09125at 1942.590 kb on - strand, within AMB_RS09125at 1942.590 kb on - strand, within AMB_RS09125at 1942.759 kb on + strand, within AMB_RS09125at 1943.531 kb on + strand, within AMB_RS09130at 1943.531 kb on + strand, within AMB_RS09130at 1943.532 kb on - strand, within AMB_RS09130at 1943.561 kb on + strand, within AMB_RS09130at 1943.561 kb on + strand, within AMB_RS09130at 1943.562 kb on - strand, within AMB_RS09130at 1943.562 kb on - strand, within AMB_RS09130at 1943.609 kb on - strand, within AMB_RS09130at 1943.744 kb on + strand, within AMB_RS09130at 1943.745 kb on - strand, within AMB_RS09130at 1943.745 kb on - strand, within AMB_RS09130at 1943.864 kb on + strand, within AMB_RS09130at 1943.864 kb on + strand, within AMB_RS09130at 1943.870 kb on + strand, within AMB_RS09130at 1943.870 kb on + strand, within AMB_RS09130at 1943.870 kb on + strand, within AMB_RS09130at 1943.871 kb on - strand, within AMB_RS09130at 1943.871 kb on - strand, within AMB_RS09130at 1943.871 kb on - strand, within AMB_RS09130at 1943.885 kb on + strand, within AMB_RS09130at 1943.885 kb on + strand, within AMB_RS09130at 1943.886 kb on - strand, within AMB_RS09130at 1943.886 kb on - strand, within AMB_RS09130

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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1,941,114 + AMB_RS09115 0.11 -2.8
1,941,114 + AMB_RS09115 0.11 +0.6
1,941,114 + AMB_RS09115 0.11 +1.2
1,941,114 + AMB_RS09115 0.11 +1.5
1,941,114 + AMB_RS09115 0.11 -2.0
1,941,114 + AMB_RS09115 0.11 +0.3
1,941,115 - AMB_RS09115 0.12 +1.4
1,941,115 - AMB_RS09115 0.12 -0.6
1,941,285 + AMB_RS09115 0.64 +1.3
1,941,285 + AMB_RS09115 0.64 +0.8
1,941,285 + AMB_RS09115 0.64 -1.3
1,941,286 - AMB_RS09115 0.64 +1.3
1,941,286 - AMB_RS09115 0.64 -0.6
1,941,423 - -3.2
1,941,423 - -1.3
1,941,500 + AMB_RS09120 0.14 -2.5
1,941,500 + AMB_RS09120 0.14 +1.7
1,941,500 + AMB_RS09120 0.14 -0.5
1,941,500 + AMB_RS09120 0.14 -1.3
1,941,501 - AMB_RS09120 0.14 -2.4
1,942,147 + +2.0
1,942,148 - -0.6
1,942,230 - AMB_RS09125 0.15 -1.0
1,942,230 - AMB_RS09125 0.15 -2.0
1,942,259 + AMB_RS09125 0.19 -1.6
1,942,259 + AMB_RS09125 0.19 +0.8
1,942,259 + AMB_RS09125 0.19 -1.6
1,942,260 - AMB_RS09125 0.19 -1.4
1,942,432 + AMB_RS09125 0.41 -0.0
1,942,589 + AMB_RS09125 0.61 +2.1
1,942,589 + AMB_RS09125 0.61 +0.3
1,942,589 + AMB_RS09125 0.61 -1.0
1,942,589 + AMB_RS09125 0.61 -1.3
1,942,589 + AMB_RS09125 0.61 +0.2
1,942,590 - AMB_RS09125 0.62 +1.1
1,942,590 - AMB_RS09125 0.62 -1.8
1,942,590 - AMB_RS09125 0.62 -2.8
1,942,590 - AMB_RS09125 0.62 -0.0
1,942,590 - AMB_RS09125 0.62 +0.6
1,942,759 + AMB_RS09125 0.83 -0.8
1,943,531 + AMB_RS09130 0.37 +2.1
1,943,531 + AMB_RS09130 0.37 +2.9
1,943,532 - AMB_RS09130 0.37 -3.9
1,943,561 + AMB_RS09130 0.40 +0.4
1,943,561 + AMB_RS09130 0.40 -0.2
1,943,562 - AMB_RS09130 0.40 +0.5
1,943,562 - AMB_RS09130 0.40 -3.4
1,943,609 - AMB_RS09130 0.44 -0.6
1,943,744 + AMB_RS09130 0.54 +0.7
1,943,745 - AMB_RS09130 0.54 +1.4
1,943,745 - AMB_RS09130 0.54 +2.2
1,943,864 + AMB_RS09130 0.64 +2.3
1,943,864 + AMB_RS09130 0.64 -3.4
1,943,870 + AMB_RS09130 0.65 -2.5
1,943,870 + AMB_RS09130 0.65 -2.8
1,943,870 + AMB_RS09130 0.65 +1.0
1,943,871 - AMB_RS09130 0.65 -2.5
1,943,871 - AMB_RS09130 0.65 +1.0
1,943,871 - AMB_RS09130 0.65 -2.7
1,943,885 + AMB_RS09130 0.66 -3.0
1,943,885 + AMB_RS09130 0.66 +1.6
1,943,886 - AMB_RS09130 0.66 -3.4
1,943,886 - AMB_RS09130 0.66 +2.6

Or see this region's nucleotide sequence